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    SCAF11 SR-related CTD associated factor 11 [ Bos taurus (domestic cattle) ]

    Gene ID: 538632, updated on 27-Dec-2024

    Summary

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    Official Symbol
    SCAF11provided by VGNC
    Official Full Name
    SR-related CTD associated factor 11provided by VGNC
    Primary source
    VGNC:VGNC:34314
    See related
    BGD:BT26848; Ensembl:ENSBTAG00000001810
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    SFRS2IP; SRSF2IP
    Orthologs
    human mouse all
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    Genomic context

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    See SCAF11 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (34210443..34304810)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 38 member 2 Neighboring gene solute carrier family 38 member 1 Neighboring gene uncharacterized LOC132345273 Neighboring gene transfer RNA cysteine (anticodon ACA) Neighboring gene AT-rich interaction domain 2 Neighboring gene transfer RNA cysteine (anticodon ACA)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in spliceosomal complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SCAF11
    Names
    serine/arginine-rich splicing factor 2, interacting protein
    splicing factor, arginine/serine-rich 2, interacting protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001205567.2 → NP_001192496.1  protein SCAF11

      See identical proteins and their annotated locations for NP_001192496.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000005
      UniProtKB/TrEMBL
      F1N2H2
      Conserved Domains (3) summary
      TIGR03437
      Location:1224 → 1354
      Soli_cterm; Solibacter uncharacterized C-terminal domain
      pfam06217
      Location:664 → 849
      GAGA_bind; GAGA binding protein-like family
      pfam13639
      Location:39 → 82
      zf-RING_2; Ring finger domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      34210443..34304810
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005206394.5 → XP_005206451.1  protein SCAF11 isoform X1

      See identical proteins and their annotated locations for XP_005206451.1

      UniProtKB/TrEMBL
      F1N2H2
      Related
      ENSBTAP00000058297.1, ENSBTAT00000079492.2
      Conserved Domains (3) summary
      TIGR03437
      Location:1224 → 1354
      Soli_cterm; Solibacter uncharacterized C-terminal domain
      pfam06217
      Location:664 → 849
      GAGA_bind; GAGA binding protein-like family
      pfam13639
      Location:39 → 82
      zf-RING_2; Ring finger domain

    2. XM_005206395.5 → XP_005206452.1  protein SCAF11 isoform X2

      Conserved Domains (2) summary
      pfam06217
      Location:664 → 849
      GAGA_bind; GAGA binding protein-like family
      pfam13639
      Location:39 → 82
      zf-RING_2; Ring finger domain

    3. XM_059886597.1 → XP_059742580.1  protein SCAF11 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1MHP9
      Related
      ENSBTAP00000070761.1, ENSBTAT00000070393.2
    Nucleotide Protein Strain
    Heading Accession and Version

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