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    PELI1 pellino E3 ubiquitin protein ligase 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 535054, updated on 27-Dec-2024

    Summary

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    Official Symbol
    PELI1provided by VGNC
    Official Full Name
    pellino E3 ubiquitin protein ligase 1provided by VGNC
    Primary source
    VGNC:VGNC:32740
    See related
    BGD:BT14029; Ensembl:ENSBTAG00000020865
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See PELI1 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 11 NC_037338.1 (62517237..62573790, complement)

    Chromosome 11 - NC_037338.1Genomic Context describing neighboring genes Neighboring gene UDP-glucose pyrophosphorylase 2 Neighboring gene VPS54 subunit of GARP complex Neighboring gene uncharacterized LOC107132935 Neighboring gene uncharacterized LOC132346590

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037338.1 Chromosome 11 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC142485

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein K48-linked ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of Toll signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase pellino homolog 1
    Names
    pellino homolog 1
    pellino protein
    NP_001071472.1
    XP_024854629.1
    XP_059747322.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001078004.1 → NP_001071472.1  E3 ubiquitin-protein ligase pellino homolog 1

      See identical proteins and their annotated locations for NP_001071472.1

      Status: PROVISIONAL

      Source sequence(s)
      BC126542
      UniProtKB/TrEMBL
      A0A3Q1M9E2, A0JN70
      Related
      ENSBTAP00000027798.5, ENSBTAT00000027798.6
      Conserved Domains (1) summary
      pfam04710
      Location:10 → 418
      Pellino; Pellino

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037338.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      62517237..62573790 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024998861.2 → XP_024854629.1  E3 ubiquitin-protein ligase pellino homolog 1 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1M9E2, A0AAA9SXI7
      Related
      ENSBTAP00000088020.1, ENSBTAT00000105468.1
      Conserved Domains (1) summary
      pfam04710
      Location:10 → 384
      Pellino

    2. XM_059891339.1 → XP_059747322.1  E3 ubiquitin-protein ligase pellino homolog 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1M9E2, A0JN70
    Nucleotide Protein Strain
    Heading Accession and Version

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