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    OCIAD1 OCIA domain containing 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 533520, updated on 29-Jan-2025

    Summary

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    Official Symbol
    OCIAD1provided by VGNC
    Official Full Name
    OCIA domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:53769
    See related
    BGD:BT20540; Ensembl:ENSBTAG00000010611
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    Asrij
    Orthologs
    human mouse all
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    Genomic context

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    See OCIAD1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 6 NC_037333.1 (67496284..67519222)

    Chromosome 6 - NC_037333.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 10 member 4 Neighboring gene zygote arrest 1 Neighboring gene FRY like transcription coactivator Neighboring gene OCIA domain containing 2 Neighboring gene cell wall biogenesis 43 C-terminal homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037333.1 Chromosome 6 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index. Sonstegard TS, et al. Mamm Genome, 2002 Jul. PMID 12140684
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    OCIA domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001015648.1 → NP_001015648.1  OCIA domain-containing protein 1

      See identical proteins and their annotated locations for NP_001015648.1

      Status: PROVISIONAL

      Source sequence(s)
      BT021072
      UniProtKB/Swiss-Prot
      Q3ZBB3, Q5E948
      UniProtKB/TrEMBL
      A0A140T8C4
      Related
      ENSBTAP00070002277.1, ENSBTAT00070004082.1
      Conserved Domains (1) summary
      pfam07051
      Location:23 → 109
      OCIA; Ovarian carcinoma immunoreactive antigen (OCIA)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037333.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      67496284..67519222
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005207960.4 → XP_005208017.1  OCIA domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005208017.1

      UniProtKB/TrEMBL
      A0A140T883, A0A140T8C4
      Related
      ENSBTAP00070002300.1, ENSBTAT00070004116.1
      Conserved Domains (1) summary
      pfam07051
      Location:15 → 111
      OCIA; Ovarian carcinoma immunoreactive antigen (OCIA)

    2. XM_010806132.4 → XP_010804434.1  OCIA domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_010804434.1

      UniProtKB/TrEMBL
      A0A140T883, A0A140T8C4
      Conserved Domains (1) summary
      pfam07051
      Location:15 → 111
      OCIA; Ovarian carcinoma immunoreactive antigen (OCIA)

    3. XM_005207965.5 → XP_005208022.1  OCIA domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005208022.1

      UniProtKB/TrEMBL
      A0A140T883, A0A140T8C4
      Conserved Domains (1) summary
      pfam07051
      Location:15 → 111
      OCIA; Ovarian carcinoma immunoreactive antigen (OCIA)

    4. XM_005207962.5 → XP_005208019.1  OCIA domain-containing protein 1 isoform X2

      See identical proteins and their annotated locations for XP_005208019.1

      UniProtKB/TrEMBL
      A0A3Q1LQ85
      Related
      ENSBTAP00070002293.1, ENSBTAT00070004105.1
      Conserved Domains (1) summary
      pfam07051
      Location:23 → 109
      OCIA; Ovarian carcinoma immunoreactive antigen (OCIA)

    5. XM_010806133.4 → XP_010804435.1  OCIA domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_010804435.1

      UniProtKB/TrEMBL
      A0A140T883, A0A140T8C4
      Conserved Domains (1) summary
      pfam07051
      Location:15 → 111
      OCIA; Ovarian carcinoma immunoreactive antigen (OCIA)

    RNA

    1. XR_009494780.1 RNA Sequence

    2. XR_009494781.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5E948.1 GenPept UniProtKB/Swiss-Prot:Q5E948

    Gene LinkOut

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