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    APOLD1 apolipoprotein L domain containing 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 538827, updated on 29-Jan-2025

    Summary

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    Official Symbol
    APOLD1provided by VGNC
    Official Full Name
    apolipoprotein L domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:26033
    See related
    BGD:BT14751; Ensembl:ENSBTAG00000002362
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See APOLD1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (97047945..97053959, complement)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor class C group 5 member A Neighboring gene DEAD-box helicase 47 Neighboring gene cyclin dependent kinase inhibitor 1B Neighboring gene G protein-coupled receptor 19

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in angiogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lipid transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lipoprotein metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of endothelial cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    apolipoprotein L domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001101180.1 → NP_001094650.1  apolipoprotein L domain-containing protein 1

      See identical proteins and their annotated locations for NP_001094650.1

      Status: PROVISIONAL

      Source sequence(s)
      BC149041
      UniProtKB/TrEMBL
      A6QNW9
      Related
      ENSBTAP00070045853.1, ENSBTAT00070075185.1
      Conserved Domains (1) summary
      pfam05461
      Location:53 → 105
      ApoL; Apolipoprotein L

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      97047945..97053959 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005207017.5 → XP_005207074.1  apolipoprotein L domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005207074.1

      UniProtKB/TrEMBL
      A6QNW9
      Conserved Domains (1) summary
      pfam05461
      Location:53 → 105
      ApoL; Apolipoprotein L
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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