U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CHD1 chromodomain helicase DNA binding protein 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 505123, updated on 29-Jan-2025

    Summary

    Go to the top of the page Help
    Official Symbol
    CHD1provided by VGNC
    Official Full Name
    chromodomain helicase DNA binding protein 1provided by VGNC
    Primary source
    VGNC:VGNC:27276
    See related
    BGD:BT10411; Ensembl:ENSBTAG00000020860
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CHD1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    37
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 7 NC_037334.1 (98079213..98154492, complement)

    Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene histone-lysine N-methyltransferase SETMAR-like Neighboring gene repulsive guidance molecule BMP co-receptor b Neighboring gene small nucleolar RNA U3 Neighboring gene uncharacterized LOC104969002 Neighboring gene uncharacterized LOC132345796

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037334.1 Chromosome 7 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleosome organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    chromodomain-helicase-DNA-binding protein 1
    NP_001178977.3
    XP_024849700.1
    XP_024849701.1
    XP_024849702.1
    XP_059743962.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001192048.3 → NP_001178977.3  chromodomain-helicase-DNA-binding protein 1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000007
      UniProtKB/TrEMBL
      A0A3Q1MAR5, F1MGF2
      Related
      ENSBTAP00070000631.1, ENSBTAT00070000945.1
      Conserved Domains (5) summary
      cd00024
      Location:305 → 354
      CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
      pfam00385
      Location:388 → 455
      Chromo; Chromo (CHRromatin Organisation MOdifier) domain
      pfam08648
      Location:1684 → 1793
      DUF1777; Protein of unknown function (DUF1777)
      pfam13907
      Location:1508 → 1598
      DUF4208; Domain of unknown function (DUF4208)
      cl26465
      Location:476 → 1012
      SNF2_N; SNF2 family N-terminal domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037334.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      98079213..98154492 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059887979.1 → XP_059743962.1  chromodomain-helicase-DNA-binding protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A3Q1MAR5

    2. XM_024993934.2 → XP_024849702.1  chromodomain-helicase-DNA-binding protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1LUM8, A0A3Q1MAR5
      Related
      ENSBTAP00070000637.1, ENSBTAT00070000951.1
      Conserved Domains (5) summary
      cd00024
      Location:305 → 354
      CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
      pfam00385
      Location:388 → 442
      Chromo; Chromo (CHRromatin Organisation MOdifier) domain
      pfam08648
      Location:1585 → 1694
      DUF1777; Protein of unknown function (DUF1777)
      pfam13907
      Location:1409 → 1499
      DUF4208; Domain of unknown function (DUF4208)
      cl26465
      Location:463 → 999
      SNF2_N; SNF2 family N-terminal domain

    3. XM_024993933.2 → XP_024849701.1  chromodomain-helicase-DNA-binding protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1MAR5
      Conserved Domains (5) summary
      cd00024
      Location:305 → 354
      CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
      pfam00385
      Location:388 → 442
      Chromo; Chromo (CHRromatin Organisation MOdifier) domain
      pfam08648
      Location:1672 → 1781
      DUF1777; Protein of unknown function (DUF1777)
      pfam13907
      Location:1497 → 1587
      DUF4208; Domain of unknown function (DUF4208)
      cl26465
      Location:463 → 999
      SNF2_N; SNF2 family N-terminal domain

    4. XM_024993932.2 → XP_024849700.1  chromodomain-helicase-DNA-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MAR5
      Conserved Domains (5) summary
      cd00024
      Location:305 → 354
      CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
      pfam00385
      Location:388 → 442
      Chromo; Chromo (CHRromatin Organisation MOdifier) domain
      pfam08648
      Location:1673 → 1782
      DUF1777; Protein of unknown function (DUF1777)
      pfam13907
      Location:1497 → 1587
      DUF4208; Domain of unknown function (DUF4208)
      cl26465
      Location:463 → 999
      SNF2_N; SNF2 family N-terminal domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials