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    TAX1BP1 Tax1 binding protein 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 535589, updated on 29-Jan-2025

    Summary

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    Official Symbol
    TAX1BP1provided by VGNC
    Official Full Name
    Tax1 binding protein 1provided by VGNC
    Primary source
    VGNC:VGNC:35619
    See related
    BGD:BT26624; Ensembl:ENSBTAG00000019020
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See TAX1BP1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 4 NC_037331.1 (68323127..68407211, complement)

    Chromosome 4 - NC_037331.1Genomic Context describing neighboring genes Neighboring gene cAMP responsive element binding protein 5 Neighboring gene uncharacterized LOC132345110 Neighboring gene JAZF zinc finger 1 Neighboring gene EEF1A lysine methyltransferase 2-like Neighboring gene GTP-binding nuclear protein Ran-like Neighboring gene small nucleolar RNA SNORD56 Neighboring gene 3-hydroxyisobutyrate dehydrogenase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037331.1 Chromosome 4 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC128202

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in negative regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tax1-binding protein 1 homolog
    Names
    Tax1 (human T-cell leukemia virus type I) binding protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001046409.2 → NP_001039874.1  tax1-binding protein 1 homolog

      See identical proteins and their annotated locations for NP_001039874.1

      Status: PROVISIONAL

      Source sequence(s)
      BC105389
      UniProtKB/Swiss-Prot
      Q2KJE0
      Related
      ENSBTAP00070037489.1, ENSBTAT00070062637.1
      Conserved Domains (2) summary
      pfam07888
      Location:17 → 460
      CALCOCO1; Calcium binding and coiled-coil domain (CALCOCO1) like
      cl23720
      Location:131 → 261
      RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037331.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      68323127..68407211 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024990780.2 → XP_024846548.1  tax1-binding protein 1 homolog isoform X3

      Conserved Domains (1) summary
      cl25732
      Location:17 → 460
      SMC_N; RecF/RecN/SMC N terminal domain

    2. XM_024990777.2 → XP_024846545.1  tax1-binding protein 1 homolog isoform X2

      UniProtKB/TrEMBL
      A0A3Q1MBF9
      Conserved Domains (1) summary
      cl25732
      Location:17 → 460
      SMC_N; RecF/RecN/SMC N terminal domain

    3. XM_005205539.5 → XP_005205596.1  tax1-binding protein 1 homolog isoform X1

      See identical proteins and their annotated locations for XP_005205596.1

      UniProtKB/Swiss-Prot
      Q2KJE0
      Conserved Domains (2) summary
      pfam07888
      Location:17 → 460
      CALCOCO1; Calcium binding and coiled-coil domain (CALCOCO1) like
      cl23720
      Location:131 → 261
      RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

    4. XM_010804324.4 → XP_010802626.1  tax1-binding protein 1 homolog isoform X3

      Conserved Domains (1) summary
      cl25732
      Location:17 → 460
      SMC_N; RecF/RecN/SMC N terminal domain

    5. XM_005205540.5 → XP_005205597.1  tax1-binding protein 1 homolog isoform X2

      See identical proteins and their annotated locations for XP_005205597.1

      UniProtKB/TrEMBL
      A0A3Q1MBF9
      Related
      ENSBTAP00070037498.1, ENSBTAT00070062649.1
      Conserved Domains (1) summary
      cl25732
      Location:17 → 460
      SMC_N; RecF/RecN/SMC N terminal domain

    6. XM_059885660.1 → XP_059741643.1  tax1-binding protein 1 homolog isoform X1

      UniProtKB/Swiss-Prot
      Q2KJE0

    7. XM_059885662.1 → XP_059741645.1  tax1-binding protein 1 homolog isoform X4

      UniProtKB/TrEMBL
      A0A3Q1LTU6

    8. XM_059885661.1 → XP_059741644.1  tax1-binding protein 1 homolog isoform X4

      UniProtKB/TrEMBL
      A0A3Q1LTU6
      Related
      ENSBTAP00070037463.1, ENSBTAT00070062608.1
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2KJE0.1 GenPept UniProtKB/Swiss-Prot:Q2KJE0

    Gene LinkOut

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