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    EPC1 enhancer of polycomb homolog 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 534386, updated on 1-Jan-2025

    Summary

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    Official Symbol
    EPC1provided by VGNC
    Official Full Name
    enhancer of polycomb homolog 1provided by VGNC
    Primary source
    VGNC:VGNC:28527
    See related
    BGD:BT19181; Ensembl:ENSBTAG00000001552
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See EPC1 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 13 NC_037340.1 (33129770..33227587)

    Chromosome 13 - NC_037340.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 39 member 12 Neighboring gene calcium voltage-gated channel auxiliary subunit beta 2 Neighboring gene NOP2/Sun RNA methyltransferase 6 Neighboring gene U6 spliceosomal RNA Neighboring gene kinesin family member 5B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037340.1 Chromosome 13 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of NuA4 histone acetyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of piccolo histone acetyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    enhancer of polycomb homolog 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001192810.2 → NP_001179739.2  enhancer of polycomb homolog 1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000013
      UniProtKB/TrEMBL
      A0A3Q1N982, E1BB99
      Related
      ENSBTAP00000002038.6, ENSBTAT00000002038.7
      Conserved Domains (2) summary
      pfam06752
      Location:582 → 842
      E_Pc_C; Enhancer of Polycomb C-terminus
      cl26518
      Location:7 → 148
      EPL1; Enhancer of polycomb-like

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037340.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      33129770..33227587
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059892686.1 → XP_059748669.1  enhancer of polycomb homolog 1 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1LTI1
      Related
      ENSBTAP00000063775.1, ENSBTAT00000079025.2

    2. XM_015473993.3 → XP_015329479.2  enhancer of polycomb homolog 1 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1LTI1
      Conserved Domains (2) summary
      pfam06752
      Location:532 → 792
      E_Pc_C; Enhancer of Polycomb C-terminus
      cl26518
      Location:1 → 98
      EPL1; Enhancer of polycomb-like

    3. XM_005214214.5 → XP_005214271.2  enhancer of polycomb homolog 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1N982
      Related
      ENSBTAP00000067688.2, ENSBTAT00000072354.2
      Conserved Domains (2) summary
      pfam06752
      Location:582 → 813
      E_Pc_C; Enhancer of Polycomb C-terminus
      cl26518
      Location:7 → 148
      EPL1; Enhancer of polycomb-like

    4. XM_059892687.1 → XP_059748670.1  enhancer of polycomb homolog 1 isoform X3

    5. XM_059892688.1 → XP_059748671.1  enhancer of polycomb homolog 1 isoform X4

    Nucleotide Protein Strain
    Heading Accession and Version

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