U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase [ Bos taurus (domestic cattle) ]

    Gene ID: 508608, updated on 29-Jan-2025

    Summary

    Go to the top of the page Help
    Official Symbol
    PGAM5provided by VGNC
    Official Full Name
    PGAM family member 5, mitochondrial serine/threonine protein phosphataseprovided by VGNC
    Primary source
    VGNC:VGNC:32780
    See related
    BGD:BT16154; Ensembl:ENSBTAG00000007513
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PGAM5 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 17 NC_037344.1 (44502890..44510533, complement)

    Chromosome 17 - NC_037344.1Genomic Context describing neighboring genes Neighboring gene golgin A3 Neighboring gene ankyrin repeat and LEM domain containing 2 Neighboring gene U6 spliceosomal RNA Neighboring gene peroxisomal membrane protein 2 Neighboring gene DNA polymerase epsilon, catalytic subunit

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037344.1 Chromosome 17 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-threonine dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of mitochondrial fission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    serine/threonine-protein phosphatase PGAM5, mitochondrial
    Names
    phosphoglycerate mutase family member 5
    NP_001179120.1
    XP_059731914.1
    XP_059731915.1
    XP_059731916.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001192191.1 → NP_001179120.1  serine/threonine-protein phosphatase PGAM5, mitochondrial

      See identical proteins and their annotated locations for NP_001179120.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000017
      UniProtKB/TrEMBL
      E1BIE7
      Related
      ENSBTAP00070014878.1, ENSBTAT00070025049.1
      Conserved Domains (1) summary
      cd07067
      Location:99 → 272
      HP_PGM_like; Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037344.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      44502890..44510533 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059875933.1 → XP_059731916.1  serine/threonine-protein phosphatase PGAM5, mitochondrial isoform X3

    2. XM_059875931.1 → XP_059731914.1  serine/threonine-protein phosphatase PGAM5, mitochondrial isoform X1

    3. XM_059875932.1 → XP_059731915.1  serine/threonine-protein phosphatase PGAM5, mitochondrial isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.