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    TAF1B TATA-box binding protein associated factor, RNA polymerase I subunit B [ Bos taurus (domestic cattle) ]

    Gene ID: 511236, updated on 27-Dec-2024

    Summary

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    Official Symbol
    TAF1Bprovided by VGNC
    Official Full Name
    TATA-box binding protein associated factor, RNA polymerase I subunit Bprovided by VGNC
    Primary source
    VGNC:VGNC:35570
    See related
    BGD:BT18501; Ensembl:ENSBTAG00000007543
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    TAFI63
    Orthologs
    human mouse all
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    Genomic context

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    See TAF1B in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 11 NC_037338.1 (87654482..87710164, complement)

    Chromosome 11 - NC_037338.1Genomic Context describing neighboring genes Neighboring gene KLF transcription factor 11 Neighboring gene grainyhead like transcription factor 1 Neighboring gene eukaryotic translation initiation factor 1-like Neighboring gene uncharacterized LOC132346625 Neighboring gene uncharacterized LOC132346624 Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037338.1 Chromosome 11 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Clone Names

    • MGC139058

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase I core promoter sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA polymerase I preinitiation complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleolar large rRNA transcription by RNA polymerase I IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase I core factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of RNA polymerase transcription factor SL1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TATA box-binding protein-associated factor RNA polymerase I subunit B
    Names
    RNA polymerase I-specific TBP-associated factor 63 kDa
    TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa
    TATA box-binding protein-associated factor 1B
    TBP-associated factor 1B
    transcription initiation factor SL1/TIF-IB subunit B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001075503.1 → NP_001068971.1  TATA box-binding protein-associated factor RNA polymerase I subunit B

      See identical proteins and their annotated locations for NP_001068971.1

      Status: PROVISIONAL

      Source sequence(s)
      BC116032
      UniProtKB/Swiss-Prot
      E1BGL1, Q1JQD6
      UniProtKB/TrEMBL
      A0AAA9THX4
      Related
      ENSBTAP00000079455.1, ENSBTAT00000106337.1
      Conserved Domains (1) summary
      pfam11781
      Location:7 → 39
      zf-RRN7; Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037338.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      87654482..87710164 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024998510.2 → XP_024854278.1  TATA box-binding protein-associated factor RNA polymerase I subunit B isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1JQD6.1 GenPept UniProtKB/Swiss-Prot:Q1JQD6

    Gene LinkOut

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