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    CIR1 corepressor interacting with RBPJ, CIR1 [ Bos taurus (domestic cattle) ]

    Gene ID: 534057, updated on 30-Jan-2025

    Summary

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    Official Symbol
    CIR1provided by VGNC
    Official Full Name
    corepressor interacting with RBPJ, CIR1provided by VGNC
    Primary source
    VGNC:VGNC:59328
    See related
    EnsemblRapid:ENSBTAG00070004784
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See CIR1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (22397308..22439127)

    Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107132241 Neighboring gene G protein-coupled receptor 155 Neighboring gene secernin 3 Neighboring gene uncharacterized LOC132342957 Neighboring gene Sp9 transcription factor Neighboring gene small nucleolar RNA SNORA72

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    corepressor interacting with RBPJ 1; LOW QUALITY PROTEIN: corepressor interacting with RBPJ 1
    Names
    corepressor interacting with RBPJ, 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      22397308..22439127
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024980124.2 → XP_024835892.1  LOW QUALITY PROTEIN: corepressor interacting with RBPJ 1

      UniProtKB/TrEMBL
      F1MQD7
      Related
      ENSBTAP00070006254.1, ENSBTAT00070010929.1
      Conserved Domains (1) summary
      pfam10197
      Location:13 → 49
      Cir_N; N-terminal domain of CBF1 interacting co-repressor CIR
    Nucleotide Protein Strain
    Heading Accession and Version

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