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    CTDSP2 CTD small phosphatase 2 [ Bos taurus (domestic cattle) ]

    Gene ID: 506115, updated on 27-Dec-2024

    Summary

    Official Symbol
    CTDSP2provided by VGNC
    Official Full Name
    CTD small phosphatase 2provided by VGNC
    Primary source
    VGNC:VGNC:27791
    See related
    BGD:BT12499; Ensembl:ENSBTAG00000061283
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    NEW
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    Genomic context

    See CTDSP2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (55634049..55654523)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene ATP23 metallopeptidase and ATP synthase assembly factor homolog Neighboring gene uncharacterized LOC112446704 Neighboring gene microRNA mir-26a-2 Neighboring gene advillin Neighboring gene Ts translation elongation factor, mitochondrial

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    Expression

    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    General protein information

    Preferred Names
    carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2
    Names
    CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
    NP_001039400.1
    XP_010803430.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001045935.3NP_001039400.1  carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2

      See identical proteins and their annotated locations for NP_001039400.1

      Status: PROVISIONAL

      Source sequence(s)
      BC133616
      UniProtKB/TrEMBL
      A0AAA9TIK6, Q2KJ43
      Related
      ENSBTAP00000097087.1, ENSBTAT00000123264.1
      Conserved Domains (1) summary
      TIGR02251
      Location:101260
      HIF-SF_euk; Dullard-like phosphatase domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      55634049..55654523
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010805128.4XP_010803430.1  carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2 isoform X1

      Conserved Domains (1) summary
      TIGR02251
      Location:82226
      HIF-SF_euk; Dullard-like phosphatase domain

    RNA

    1. XR_003034558.2 RNA Sequence