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    TSPAN4 tetraspanin 4 [ Bos taurus (domestic cattle) ]

    Gene ID: 505288, updated on 1-Jan-2025

    Summary

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    Official Symbol
    TSPAN4provided by VGNC
    Official Full Name
    tetraspanin 4provided by VGNC
    Primary source
    VGNC:VGNC:36439
    See related
    BGD:BT14026; Ensembl:ENSBTAG00000019369
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See TSPAN4 in Genome Data Viewer
    Location:
    chromosome: 29
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 29 NC_037356.1 (50514096..50530477, complement)

    Chromosome 29 - NC_037356.1Genomic Context describing neighboring genes Neighboring gene adaptor related protein complex 2 subunit alpha 2 Neighboring gene uncharacterized LOC132344226 Neighboring gene microRNA mir-2409 Neighboring gene chitinase domain containing 1 Neighboring gene basic proline-rich protein Neighboring gene RNA polymerase II, I and III subunit L Neighboring gene CD151 molecule

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037356.1 Chromosome 29 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC166145

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tetraspanin-4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001101852.1 → NP_001095322.1  tetraspanin-4

      See identical proteins and their annotated locations for NP_001095322.1

      Status: PROVISIONAL

      Source sequence(s)
      BC150101
      UniProtKB/TrEMBL
      A0A3Q1MH12, A6QR37
      Conserved Domains (1) summary
      cd03165
      Location:105 → 202
      NET-5_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model ...

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037356.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      50514096..50530477 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005227315.5 → XP_005227372.1  tetraspanin-4 isoform X1

      See identical proteins and their annotated locations for XP_005227372.1

      UniProtKB/TrEMBL
      A0A3Q1MH12, A6QR37
      Conserved Domains (1) summary
      cd03165
      Location:105 → 202
      NET-5_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model ...

    2. XM_005227314.5 → XP_005227371.1  tetraspanin-4 isoform X1

      See identical proteins and their annotated locations for XP_005227371.1

      UniProtKB/TrEMBL
      A0A3Q1MH12, A6QR37
      Related
      ENSBTAP00000070503.2, ENSBTAT00000073353.2
      Conserved Domains (1) summary
      cd03165
      Location:105 → 202
      NET-5_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model ...

    3. XM_059882787.1 → XP_059738770.1  tetraspanin-4 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MH12, A6QR37

    4. XM_059882789.1 → XP_059738772.1  tetraspanin-4 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MH12, A6QR37

    5. XM_059882788.1 → XP_059738771.1  tetraspanin-4 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MH12, A6QR37

    6. XM_005227312.5 → XP_005227369.1  tetraspanin-4 isoform X1

      See identical proteins and their annotated locations for XP_005227369.1

      UniProtKB/TrEMBL
      A0A3Q1MH12, A6QR37
      Conserved Domains (1) summary
      cd03165
      Location:105 → 202
      NET-5_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model ...

    7. XM_005227311.5 → XP_005227368.1  tetraspanin-4 isoform X1

      See identical proteins and their annotated locations for XP_005227368.1

      UniProtKB/TrEMBL
      A0A3Q1MH12, A6QR37
      Conserved Domains (1) summary
      cd03165
      Location:105 → 202
      NET-5_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model ...

    8. XM_059882790.1 → XP_059738773.1  tetraspanin-4 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MH12, A6QR37

    9. XM_024987011.2 → XP_024842779.1  tetraspanin-4 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MH12, A6QR37
      Conserved Domains (1) summary
      cd03165
      Location:105 → 202
      NET-5_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model ...

    10. XM_005227310.5 → XP_005227367.1  tetraspanin-4 isoform X1

      See identical proteins and their annotated locations for XP_005227367.1

      UniProtKB/TrEMBL
      A0A3Q1MH12, A6QR37
      Conserved Domains (1) summary
      cd03165
      Location:105 → 202
      NET-5_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model ...

    11. XM_005227309.5 → XP_005227366.1  tetraspanin-4 isoform X1

      See identical proteins and their annotated locations for XP_005227366.1

      UniProtKB/TrEMBL
      A0A3Q1MH12, A6QR37
      Conserved Domains (1) summary
      cd03165
      Location:105 → 202
      NET-5_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model ...
    Nucleotide Protein Strain
    Heading Accession and Version

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