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    ZNFX1 zinc finger NFX1-type containing 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 539807, updated on 27-Dec-2024

    Summary

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    Official Symbol
    ZNFX1provided by VGNC
    Official Full Name
    zinc finger NFX1-type containing 1provided by VGNC
    Primary source
    VGNC:VGNC:37357
    See related
    BGD:BT18741; Ensembl:ENSBTAG00000020166
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See ZNFX1 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 13 NC_037340.1 (77348734..77375331, complement)

    Chromosome 13 - NC_037340.1Genomic Context describing neighboring genes Neighboring gene staufen double-stranded RNA binding protein 1 Neighboring gene DEAD-box helicase 27 Neighboring gene uncharacterized LOC100847759 Neighboring gene small nucleolar SNORD12/SNORD106 Neighboring gene small nucleolar SNORD12/SNORD106

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037340.1 Chromosome 13 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulatory ncRNA-mediated heterochromatin formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nuclear RNA-directed RNA polymerase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    NFX1-type zinc finger-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001205716.2 → NP_001192645.2  NFX1-type zinc finger-containing protein 1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000013
      UniProtKB/TrEMBL
      E1BN24
      Conserved Domains (6) summary
      cd06008
      Location:1462 → 1506
      NF-X1-zinc-finger; Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger ...
      COG1112
      Location:919 → 1256
      DNA2; Superfamily I DNA and/or RNA helicase [Replication, recombination and repair]
      cl25732
      Location:1626 → 1837
      SMC_N; RecF/RecN/SMC N terminal domain
      cl26067
      Location:1434 → 1572
      Keratin_B2; Keratin, high sulfur B2 protein
      cl26261
      Location:599 → 732
      AAA_11; AAA domain
      cl28310
      Location:28 → 124
      Rho; Transcription termination factor Rho [Transcription]

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037340.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      77348734..77375331 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025000769.2 → XP_024856537.1  NFX1-type zinc finger-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      E1BN24
      Related
      ENSBTAP00000026859.3, ENSBTAT00000026859.4
      Conserved Domains (6) summary
      cd06008
      Location:1462 → 1506
      NF-X1-zinc-finger; Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger ...
      COG1112
      Location:919 → 1256
      DNA2; Superfamily I DNA and/or RNA helicase [Replication, recombination and repair]
      cl25732
      Location:1626 → 1837
      SMC_N; RecF/RecN/SMC N terminal domain
      cl26067
      Location:1434 → 1572
      Keratin_B2; Keratin, high sulfur B2 protein
      cl26261
      Location:599 → 732
      AAA_11; AAA domain
      cl28310
      Location:28 → 124
      Rho; Transcription termination factor Rho [Transcription]
    Nucleotide Protein Strain
    Heading Accession and Version

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