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    TCF25 transcription factor 25 [ Bos taurus (domestic cattle) ]

    Gene ID: 100848970, updated on 29-Jan-2025

    Summary

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    Official Symbol
    TCF25provided by VGNC
    Official Full Name
    transcription factor 25provided by VGNC
    Primary source
    VGNC:VGNC:35692
    See related
    BGD:BT16960; Ensembl:ENSBTAG00000012102
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See TCF25 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 18 NC_037345.1 (14681457..14702859)

    Chromosome 18 - NC_037345.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 276 Neighboring gene FA complementation group A Neighboring gene spire type actin nucleation factor 2 Neighboring gene uncharacterized LOC132342795 Neighboring gene melanocortin 1 receptor Neighboring gene tubulin beta 3 class III

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037345.1 Chromosome 18 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Unexpected cross-species contamination in genome sequencing projects. Merchant S, et al. PeerJ, 2014. PMID 25426337, Free PMC Article
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC148804

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RQC complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ribosome quality control complex subunit TCF25

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001099177.2 → NP_001092647.1  ribosome quality control complex subunit TCF25

      See identical proteins and their annotated locations for NP_001092647.1

      Status: PROVISIONAL

      Source sequence(s)
      BC142262
      UniProtKB/TrEMBL
      A5PJW3, F1MYH7
      Related
      ENSBTAP00070041871.1, ENSBTAT00070068534.1
      Conserved Domains (1) summary
      pfam04910
      Location:248 → 588
      Tcf25; Transcriptional repressor TCF25

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037345.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      14681457..14702859
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024977926.2 → XP_024833694.1  ribosome quality control complex subunit TCF25 isoform X1

      UniProtKB/TrEMBL
      F1MYH7
      Conserved Domains (1) summary
      pfam04910
      Location:247 → 587
      Tcf25; Transcriptional repressor TCF25
    Nucleotide Protein Strain
    Heading Accession and Version

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