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    ZRANB1 zinc finger RANBP2-type containing 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 523338, updated on 30-Jan-2025

    Summary

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    Official Symbol
    ZRANB1provided by VGNC
    Official Full Name
    zinc finger RANBP2-type containing 1provided by VGNC
    Primary source
    VGNC:VGNC:37371
    See related
    BGD:BT25908; EnsemblRapid:ENSBTAG00070024462
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See ZRANB1 in Genome Data Viewer
    Location:
    chromosome: 26
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 26 NC_037353.1 (44470387..44545455)

    Chromosome 26 - NC_037353.1Genomic Context describing neighboring genes Neighboring gene abraxas 2, BRISC complex subunit Neighboring gene uncharacterized LOC112444496 Neighboring gene C-terminal binding protein 2 Neighboring gene collagen alpha-1(I) chain-like Neighboring gene uncharacterized LOC112444501

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037353.1 Chromosome 26 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables K63-linked polyubiquitin modification-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K29-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K33-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein deubiquitination involved in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin thioesterase ZRANB1
    Names
    Zinc finger Ran-binding domain-containing protein 1
    zinc finger, RAN-binding domain containing 1 protein
    NP_001094584.1
    XP_010818436.1
    XP_024841406.1
    XP_059737851.1
    XP_059737853.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001101114.1 → NP_001094584.1  ubiquitin thioesterase ZRANB1

      See identical proteins and their annotated locations for NP_001094584.1

      Status: PROVISIONAL

      Source sequence(s)
      BC149099
      UniProtKB/Swiss-Prot
      A6QP16
      Conserved Domains (4) summary
      smart00547
      Location:152 → 175
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:88 → 107
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam02338
      Location:438 → 586
      OTU; OTU-like cysteine protease
      pfam18418
      Location:246 → 341
      AnkUBD; Ankyrin ubiquitin-binding domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037353.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      44470387..44545455
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010820134.3 → XP_010818436.1  ubiquitin thioesterase ZRANB1 isoform X1

      See identical proteins and their annotated locations for XP_010818436.1

      UniProtKB/TrEMBL
      A0A452DHY0
      Related
      ENSBTAP00070033184.1, ENSBTAT00070055271.1
      Conserved Domains (3) summary
      smart00547
      Location:179 → 202
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:115 → 134
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam02338
      Location:465 → 613
      OTU; OTU-like cysteine protease

    2. XM_059881868.1 → XP_059737851.1  ubiquitin thioesterase ZRANB1 isoform X3

    3. XM_024985638.2 → XP_024841406.1  ubiquitin thioesterase ZRANB1 isoform X2

      UniProtKB/Swiss-Prot
      A6QP16
      Related
      ENSBTAP00070033190.1, ENSBTAT00070055277.1
      Conserved Domains (4) summary
      smart00547
      Location:152 → 175
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:88 → 107
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam02338
      Location:438 → 586
      OTU; OTU-like cysteine protease
      pfam18418
      Location:246 → 341
      AnkUBD; Ankyrin ubiquitin-binding domain

    4. XM_059881870.1 → XP_059737853.1  ubiquitin thioesterase ZRANB1 isoform X4

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A6QP16.1 GenPept UniProtKB/Swiss-Prot:A6QP16

    Gene LinkOut

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