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    CLPP caseinolytic mitochondrial matrix peptidase proteolytic subunit [ Bos taurus (domestic cattle) ]

    Gene ID: 535981, updated on 27-Dec-2024

    Summary

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    Official Symbol
    CLPPprovided by VGNC
    Official Full Name
    caseinolytic mitochondrial matrix peptidase proteolytic subunitprovided by VGNC
    Primary source
    VGNC:VGNC:27459
    See related
    BGD:BT20598; Ensembl:ENSBTAG00000014712
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See CLPP in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 7 NC_037334.1 (18079516..18084741, complement)

    Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene alkB homolog 7 Neighboring gene persephin Neighboring gene alkaline ceramidase 1 Neighboring gene uncharacterized LOC132345711 Neighboring gene MLLT1 super elongation complex subunit Neighboring gene acyl-CoA synthetase bubblegum family member 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037334.1 Chromosome 7 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC137504

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP-dependent peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATPase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein quality control for misfolded or incompletely synthesized proteins IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of endopeptidase Clp complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent Clp protease proteolytic subunit, mitochondrial
    Names
    ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog
    caseinolytic peptidase, ATP-dependent, proteolytic subunit
    endopeptidase Clp
    putative ATP-dependent Clp protease proteolytic subunit, mitochondrial
    NP_001039879.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001046414.2 → NP_001039879.1  ATP-dependent Clp protease proteolytic subunit, mitochondrial

      See identical proteins and their annotated locations for NP_001039879.1

      Status: PROVISIONAL

      Source sequence(s)
      BC112880
      UniProtKB/Swiss-Prot
      Q2KHU4
      Related
      ENSBTAP00000075347.1, ENSBTAT00000107620.1
      Conserved Domains (1) summary
      PRK00277
      Location:51 → 245
      clpP; ATP-dependent Clp protease proteolytic subunit; Reviewed

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037334.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      18079516..18084741 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2KHU4.1 GenPept UniProtKB/Swiss-Prot:Q2KHU4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.