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    JOSD1 Josephin domain containing 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 510781, updated on 27-Dec-2024

    Summary

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    Official Symbol
    JOSD1provided by VGNC
    Official Full Name
    Josephin domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:30379
    See related
    BGD:BT27235; Ensembl:ENSBTAG00000065598
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See JOSD1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (110317480..110328666, complement)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene chibby family member 1, beta catenin antagonist Neighboring gene translocase of outer mitochondrial membrane 22 Neighboring gene GTP binding protein 1 Neighboring gene Sad1 and UNC84 domain containing 2 Neighboring gene dynein axonemal light chain 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • KIAA0063

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    josephin-1
    Names
    josephin domain-containing protein 1
    NP_001014898.1
    XP_005207376.1
    XP_005207377.1
    XP_059742274.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001014898.2 → NP_001014898.1  josephin-1

      See identical proteins and their annotated locations for NP_001014898.1

      Status: PROVISIONAL

      Source sequence(s)
      BC140477
      UniProtKB/Swiss-Prot
      A5D797, Q5EAE5
      Related
      ENSBTAP00000095965.1, ENSBTAT00000123637.1
      Conserved Domains (1) summary
      pfam02099
      Location:31 → 173
      Josephin

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      110317480..110328666 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005207319.4 → XP_005207376.1  josephin-1 isoform X1

      See identical proteins and their annotated locations for XP_005207376.1

      UniProtKB/Swiss-Prot
      A5D797, Q5EAE5
      Conserved Domains (1) summary
      pfam02099
      Location:31 → 173
      Josephin

    2. XM_005207320.5 → XP_005207377.1  josephin-1 isoform X1

      See identical proteins and their annotated locations for XP_005207377.1

      UniProtKB/Swiss-Prot
      A5D797, Q5EAE5
      Conserved Domains (1) summary
      pfam02099
      Location:31 → 173
      Josephin

    3. XM_059886291.1 → XP_059742274.1  josephin-1 isoform X1

      UniProtKB/Swiss-Prot
      A5D797, Q5EAE5
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5EAE5.1 GenPept UniProtKB/Swiss-Prot:Q5EAE5

    Gene LinkOut

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