These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

1. NM_001098025.1 → NP_001091494.1  cold shock domain-containing protein E1

   See identical proteins and their annotated locations for NP_001091494.1

   Status: PROVISIONAL

   Source sequence(s)

   BC140514

   UniProtKB/TrEMBL

   A0AAA9TTF3, A5D7D3

   Conserved Domains (4) summary

   smart00357
   Location:319 → 382

   CSP; Cold shock protein domain

   pfam00313
   Location:156 → 217

   CSD; 'Cold-shock' DNA-binding domain

   pfam12901
   Location:741 → 757

   SUZ-C; SUZ-C motif

   cl09927
   Location:26 → 90

   S1_like; S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. ...

The following sections contain reference sequences that belong to a specific genome build. Explain

This section includes genomic Reference Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate assemblies. Model RNAs and proteins are also reported here.

Reference ARS-UCD2.0 Primary Assembly

Genomic

1. NC_037330.1 Reference ARS-UCD2.0 Primary Assembly

   Range

   28579247..28614810

   Download

   GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

1. XM_005204024.5 → XP_005204081.1  cold shock domain-containing protein E1 isoform X1

   UniProtKB/TrEMBL

   A0A3Q1ML77, A0AAA9TTF3

   Related

   ENSBTAP00070049794.1, ENSBTAT00070082225.1

   Conserved Domains (4) summary

   smart00357
   Location:396 → 459

   CSP; Cold shock protein domain

   pfam00313
   Location:233 → 294

   CSD; 'Cold-shock' DNA-binding domain

   pfam12901
   Location:818 → 833

   SUZ-C; SUZ-C motif

   cl25438
   Location:231 → 404

   RNB; RNB domain

2. XM_005204025.5 → XP_005204082.1  cold shock domain-containing protein E1 isoform X2

   UniProtKB/TrEMBL

   A0AAA9TTF3

   Related

   ENSBTAP00070049782.1, ENSBTAT00070082200.1

   Conserved Domains (5) summary

   smart00357
   Location:365 → 428

   CSP; Cold shock protein domain

   pfam00313
   Location:202 → 263

   CSD; 'Cold-shock' DNA-binding domain

   pfam12901
   Location:787 → 802

   SUZ-C; SUZ-C motif

   cl09927
   Location:72 → 136

   S1_like; S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. ...

   cl25438
   Location:200 → 373

   RNB; RNB domain

3. XM_005204026.5 → XP_005204083.1  cold shock domain-containing protein E1 isoform X3

   UniProtKB/TrEMBL

   A0AAA9TTF3

   Conserved Domains (4) summary

   smart00357
   Location:350 → 413

   CSP; Cold shock protein domain

   pfam00313
   Location:187 → 248

   CSD; 'Cold-shock' DNA-binding domain

   pfam12901
   Location:772 → 787

   SUZ-C; SUZ-C motif

   cl25438
   Location:185 → 358

   RNB; RNB domain

4. XM_005204027.5 → XP_005204084.1  cold shock domain-containing protein E1 isoform X4

   See identical proteins and their annotated locations for XP_005204084.1

   UniProtKB/TrEMBL

   A0AAA9TTF3, F1MS94

   Conserved Domains (5) summary

   smart00357
   Location:319 → 382

   CSP; Cold shock protein domain

   pfam00313
   Location:156 → 217

   CSD; 'Cold-shock' DNA-binding domain

   pfam12901
   Location:741 → 756

   SUZ-C; SUZ-C motif

   cl09927
   Location:26 → 90

   S1_like; S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. ...

   cl25438
   Location:154 → 327

   RNB; RNB domain

5. XM_015463336.3 → XP_015318822.1  cold shock domain-containing protein E1 isoform X3

   UniProtKB/TrEMBL

   A0AAA9TTF3

   Related

   ENSBTAP00070049748.1, ENSBTAT00070082114.1

   Conserved Domains (4) summary

   smart00357
   Location:350 → 413

   CSP; Cold shock protein domain

   pfam00313
   Location:187 → 248

   CSD; 'Cold-shock' DNA-binding domain

   pfam12901
   Location:772 → 787

   SUZ-C; SUZ-C motif

   cl25438
   Location:185 → 358

   RNB; RNB domain

6. XM_024988400.2 → XP_024844168.1  cold shock domain-containing protein E1 isoform X4

   UniProtKB/TrEMBL

   A0AAA9TTF3, F1MS94

   Conserved Domains (5) summary

   smart00357
   Location:319 → 382

   CSP; Cold shock protein domain

   pfam00313
   Location:156 → 217

   CSD; 'Cold-shock' DNA-binding domain

   pfam12901
   Location:741 → 756

   SUZ-C; SUZ-C motif

   cl09927
   Location:26 → 90

   S1_like; S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. ...

   cl25438
   Location:154 → 327

   RNB; RNB domain