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    MINDY3 MINDY lysine 48 deubiquitinase 3 [ Bos taurus (domestic cattle) ]

    Gene ID: 538509, updated on 27-Dec-2024

    Summary

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    Official Symbol
    MINDY3provided by VGNC
    Official Full Name
    MINDY lysine 48 deubiquitinase 3provided by VGNC
    Primary source
    VGNC:VGNC:31478
    See related
    Ensembl:ENSBTAG00000010387
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    FAM188A; C13H10ORF97
    Orthologs
    human mouse all
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    Genomic context

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    See MINDY3 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 13 NC_037340.1 (30319507..30399885, complement)

    Chromosome 13 - NC_037340.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112449436 Neighboring gene integrin subunit alpha 8 Neighboring gene uncharacterized LOC132346854 Neighboring gene phosphotriesterase related

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037340.1 Chromosome 13 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC139777

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables K48-linked deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein K48-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin carboxyl-terminal hydrolase MINDY-3
    Names
    deubiquitinating enzyme MINDY-3
    family with sequence similarity 188 member A
    protein FAM188A
    ubiquitin carboxyl-terminal hydrolase FAM188A
    NP_001069575.1
    XP_015329483.1
    XP_059748701.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001076107.1 → NP_001069575.1  ubiquitin carboxyl-terminal hydrolase MINDY-3

      See identical proteins and their annotated locations for NP_001069575.1

      Status: PROVISIONAL

      Source sequence(s)
      BC122636
      UniProtKB/Swiss-Prot
      Q0IIH8
      UniProtKB/TrEMBL
      A0AAA9SQU9
      Related
      ENSBTAP00000013714.3, ENSBTAT00000013714.5
      Conserved Domains (1) summary
      pfam13898
      Location:29 → 315
      DUF4205; Domain of unknown function (DUF4205)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037340.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      30319507..30399885 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015473997.3 → XP_015329483.1  ubiquitin carboxyl-terminal hydrolase MINDY-3 isoform X1

      Conserved Domains (1) summary
      pfam13898
      Location:6 → 142
      DUF4205; Domain of unknown function (DUF4205)

    2. XM_059892718.1 → XP_059748701.1  ubiquitin carboxyl-terminal hydrolase MINDY-3 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0IIH8.1 GenPept UniProtKB/Swiss-Prot:Q0IIH8

    Gene LinkOut

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