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    ATF6B activating transcription factor 6 beta [ Bos taurus (domestic cattle) ]

    Gene ID: 513928, updated on 27-Dec-2024

    Summary

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    Official Symbol
    ATF6Bprovided by VGNC
    Official Full Name
    activating transcription factor 6 betaprovided by VGNC
    Primary source
    VGNC:VGNC:26245
    See related
    BGD:BT10447; Ensembl:ENSBTAG00000008794
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    CREBL1
    Orthologs
    human mouse all
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    Genomic context

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    See ATF6B in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 23 NC_037350.1 (27254943..27264835)

    Chromosome 23 - NC_037350.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132343671 Neighboring gene uncharacterized LOC101903877 Neighboring gene FKBP prolyl isomerase like Neighboring gene uncharacterized LOC132343672 Neighboring gene tenascin XB Neighboring gene cytochrome P450 family 21 subfamily A member 2 Neighboring gene complement C4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037350.1 Chromosome 23 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. YAC/BAC contig spanning the MHC class III region of cattle. Gelhaus A, et al. Cytogenet Genome Res, 2006. PMID 16974083
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum unfolded protein response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cyclic AMP-dependent transcription factor ATF-6 beta
    Names
    cAMP responsive element binding protein-like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001083683.1 → NP_001077152.1  cyclic AMP-dependent transcription factor ATF-6 beta

      See identical proteins and their annotated locations for NP_001077152.1

      Status: PROVISIONAL

      Source sequence(s)
      BC123436
      UniProtKB/TrEMBL
      A0AAA9S0Y6, A4FUY2
      Conserved Domains (1) summary
      cd14700
      Location:325 → 376
      bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037350.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      27254943..27264835
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015459879.3 → XP_015315365.1  cyclic AMP-dependent transcription factor ATF-6 beta isoform X1

      UniProtKB/TrEMBL
      A0AAA9S0Y6
      Conserved Domains (1) summary
      cd14700
      Location:341 → 392
      bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain

    2. XM_005223629.5 → XP_005223686.1  cyclic AMP-dependent transcription factor ATF-6 beta isoform X5

      UniProtKB/TrEMBL
      A0AAA9S0Y6, F6Q115
      Related
      ENSBTAP00000042742.3, ENSBTAT00000045345.4
      Conserved Domains (1) summary
      cd14700
      Location:341 → 392
      bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain

    3. XM_015459880.3 → XP_015315366.1  cyclic AMP-dependent transcription factor ATF-6 beta isoform X2

      UniProtKB/TrEMBL
      A0AAA9S0Y6
      Conserved Domains (1) summary
      cd14700
      Location:336 → 387
      bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain

    4. XM_024983570.2 → XP_024839338.1  cyclic AMP-dependent transcription factor ATF-6 beta isoform X6

      UniProtKB/TrEMBL
      A0AAA9S0Y6
      Conserved Domains (2) summary
      cd14700
      Location:336 → 387
      bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain
      pfam14362
      Location:317 → 422
      DUF4407; Domain of unknown function (DUF4407)

    5. XM_015459881.3 → XP_015315367.1  cyclic AMP-dependent transcription factor ATF-6 beta isoform X3

      UniProtKB/TrEMBL
      A0AAA9S0Y6
      Conserved Domains (1) summary
      cd14700
      Location:330 → 381
      bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain

    6. XM_024983571.2 → XP_024839339.1  cyclic AMP-dependent transcription factor ATF-6 beta isoform X7

      UniProtKB/TrEMBL
      A0AAA9S0Y6
      Related
      ENSBTAP00000076978.1, ENSBTAT00000125338.1
      Conserved Domains (2) summary
      cd14700
      Location:330 → 381
      bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain
      pfam14362
      Location:311 → 416
      DUF4407; Domain of unknown function (DUF4407)

    7. XM_015459882.3 → XP_015315368.1  cyclic AMP-dependent transcription factor ATF-6 beta isoform X4

      UniProtKB/TrEMBL
      A0AAA9S0Y6
      Conserved Domains (1) summary
      cd14700
      Location:325 → 376
      bZIP_ATF6; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-6 (ATF-6) and similar proteins: a DNA-binding and dimerization domain

    8. XM_059880311.1 → XP_059736294.1  cyclic AMP-dependent transcription factor ATF-6 beta isoform X8

    9. XM_059880312.1 → XP_059736295.1  cyclic AMP-dependent transcription factor ATF-6 beta isoform X9

    Nucleotide Protein Strain
    Heading Accession and Version

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