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    C11H2orf49 chromosome 11 C2orf49 homolog [ Bos taurus (domestic cattle) ]

    Gene ID: 540024, updated on 29-Jan-2025

    Summary

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    Official Symbol
    C11H2orf49provided by VGNC
    Official Full Name
    chromosome 11 C2orf49 homologprovided by VGNC
    Primary source
    VGNC:VGNC:52615
    See related
    Ensembl:ENSBTAG00000012332
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See C11H2orf49 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 11 NC_037338.1 (9256355..9266831)

    Chromosome 11 - NC_037338.1Genomic Context describing neighboring genes Neighboring gene transforming growth factor beta receptor associated protein 1 Neighboring gene uncharacterized LOC100848208 Neighboring gene four and a half LIM domains 2 Neighboring gene tachykinin receptor 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037338.1 Chromosome 11 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC142879

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in embryonic morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of tRNA-splicing ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ashwin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081539.1 → NP_001075008.1  ashwin

      See identical proteins and their annotated locations for NP_001075008.1

      Status: PROVISIONAL

      Source sequence(s)
      BC133333
      UniProtKB/Swiss-Prot
      A2VDP0
      UniProtKB/TrEMBL
      A0AAF6YXF3
      Related
      ENSBTAP00070048776.1, ENSBTAT00070080545.1
      Conserved Domains (1) summary
      pfam15323
      Location:13 → 232
      Ashwin; Developmental protein

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037338.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      9256355..9266831
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024999027.2 → XP_024854795.1  ashwin isoform X1

      UniProtKB/Swiss-Prot
      A2VDP0
      UniProtKB/TrEMBL
      A0AAF6YXF3
      Conserved Domains (1) summary
      pfam15323
      Location:13 → 232
      Ashwin; Developmental protein
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A2VDP0.1 GenPept UniProtKB/Swiss-Prot:A2VDP0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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    Research Materials