SDE2 SDE2 telomere maintenance homolog [Bos taurus (domestic cattle)] - Gene

Summary

Official Symbol: SDE2provided by VGNC
Official Full Name: SDE2 telomere maintenance homologprovided by VGNC
Primary source: VGNC:VGNC:34384
See related: Ensembl:ENSBTAG00000012787
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Bos taurus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as: C16H1orf55
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 16

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_12	current	ARS-UCD2.0 (GCF_002263795.3)	16	NC_037343.1 (29005211..29020714, complement)

Chromosome 16 - NC_037343.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:: NC_037343.1 Chromosome 16 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Dominette sequence data
BioProject: PRJNA294306
Analysis date: Tue Dec 17 08:57:05 2024

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The results are sufficient to initiate the screening program to reveal new carriers and to avoid further spreading of SDE2 lethal mutation.
Title: Missense mutation in SDE2 gene - new lethal defect transmitted into Polish Holstein-Friesian cattle.

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: splicing regulator SDE2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001099065.2 → NP_001092535.1 splicing regulator SDE2

Status: PROVISIONAL

Source sequence(s)

BC142453

UniProtKB/TrEMBL

A0AAA9S323, A5PKE0

Related

ENSBTAP00000016992.5, ENSBTAT00000016992.6

Conserved Domains (2) summary

pfam13297
Location:387 → 446

Telomere_Sde2_2; Telomere stability C-terminal

cl00155
Location:69 → 144

UBQ; Ubiquitin-like proteins