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    PGAP2 post-GPI attachment to proteins 2 [ Bos taurus (domestic cattle) ]

    Gene ID: 540520, updated on 27-Dec-2024

    Summary

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    Official Symbol
    PGAP2provided by VGNC
    Official Full Name
    post-GPI attachment to proteins 2provided by VGNC
    Primary source
    VGNC:VGNC:32782
    See related
    BGD:BT20526; Ensembl:ENSBTAG00000008433
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    FRAG1
    Orthologs
    human mouse all
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    Genomic context

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    See PGAP2 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 15 NC_037342.1 (51243176..51264579, complement)

    Chromosome 15 - NC_037342.1Genomic Context describing neighboring genes Neighboring gene stromal interaction molecule 1 Neighboring gene basic proline-rich protein-like Neighboring gene ras homolog family member G Neighboring gene nucleoporin 98 and 96 precursor Neighboring gene cholinergic receptor nicotinic alpha 10 subunit Neighboring gene ADP-ribosyltransferase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037342.1 Chromosome 15 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC166328

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in GPI anchor biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    post-GPI attachment to proteins factor 2
    Names
    FGF receptor activating protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001099111.1 → NP_001092581.1  post-GPI attachment to proteins factor 2

      See identical proteins and their annotated locations for NP_001092581.1

      Status: PROVISIONAL

      Source sequence(s)
      BC146186
      UniProtKB/Swiss-Prot
      A6H7B8
      Conserved Domains (1) summary
      pfam10277
      Location:18 → 241
      Frag1; Frag1/DRAM/Sfk1 family

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037342.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      51243176..51264579 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010812664.4 → XP_010810966.2  post-GPI attachment to proteins factor 2 isoform X2

      Conserved Domains (1) summary
      pfam10277
      Location:127 → 335
      Frag1; Frag1/DRAM/Sfk1 family

    2. XM_010812665.4 → XP_010810967.2  post-GPI attachment to proteins factor 2 isoform X1

      Conserved Domains (1) summary
      pfam10277
      Location:127 → 339
      Frag1; Frag1/DRAM/Sfk1 family

    3. XM_059874940.1 → XP_059730923.1  post-GPI attachment to proteins factor 2 isoform X3

      UniProtKB/TrEMBL
      A0AAA9SDV3
      Related
      ENSBTAP00000084318.1, ENSBTAT00000099809.1

    4. XM_010812668.4 → XP_010810970.1  post-GPI attachment to proteins factor 2 isoform X6

      See identical proteins and their annotated locations for XP_010810970.1

      UniProtKB/Swiss-Prot
      A6H7B8
      Conserved Domains (1) summary
      pfam10277
      Location:18 → 241
      Frag1; Frag1/DRAM/Sfk1 family

    5. XM_059874941.1 → XP_059730924.1  post-GPI attachment to proteins factor 2 isoform X6

      UniProtKB/Swiss-Prot
      A6H7B8

    6. XM_059874942.1 → XP_059730925.1  post-GPI attachment to proteins factor 2 isoform X4

    7. XM_010812669.3 → XP_010810971.1  post-GPI attachment to proteins factor 2 isoform X7

      See identical proteins and their annotated locations for XP_010810971.1

      Conserved Domains (1) summary
      pfam10277
      Location:92 → 304
      Frag1; Frag1/DRAM/Sfk1 family

    8. XM_005216200.5 → XP_005216257.1  post-GPI attachment to proteins factor 2 isoform X4

      See identical proteins and their annotated locations for XP_005216257.1

      Conserved Domains (1) summary
      pfam10277
      Location:18 → 237
      Frag1; Frag1/DRAM/Sfk1 family

    9. XM_010812666.4 → XP_010810968.1  post-GPI attachment to proteins factor 2 isoform X5

      See identical proteins and their annotated locations for XP_010810968.1

      Conserved Domains (1) summary
      pfam10277
      Location:75 → 287
      Frag1; Frag1/DRAM/Sfk1 family
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A6H7B8.1 GenPept UniProtKB/Swiss-Prot:A6H7B8

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