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    NCKIPSD NCK interacting protein with SH3 domain [ Bos taurus (domestic cattle) ]

    Gene ID: 516941, updated on 27-Dec-2024

    Summary

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    Official Symbol
    NCKIPSDprovided by VGNC
    Official Full Name
    NCK interacting protein with SH3 domainprovided by VGNC
    Primary source
    VGNC:VGNC:31918
    See related
    BGD:BT21523; Ensembl:ENSBTAG00000021850
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See NCKIPSD in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 22 NC_037349.1 (51201248..51213762)

    Chromosome 22 - NC_037349.1Genomic Context describing neighboring genes Neighboring gene protein kinase cAMP-dependent type II regulatory subunit alpha Neighboring gene ribosomal protein S24 pseudogene Neighboring gene inositol hexakisphosphate kinase 2 Neighboring gene cadherin EGF LAG seven-pass G-type receptor 3 Neighboring gene solute carrier family 26 member 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037349.1 Chromosome 22 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables Arp2/3 complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    NCK-interacting protein with SH3 domain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191238.3 → NP_001178167.2  NCK-interacting protein with SH3 domain

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000022
      UniProtKB/TrEMBL
      A0AAA9SB48
      Conserved Domains (2) summary
      cd11849
      Location:1 → 54
      SH3_SPIN90; Src homology 3 domain of SH3 protein interacting with Nck, 90 kDa (SPIN90)
      pfam09431
      Location:573 → 690
      DUF2013; Protein of unknown function (DUF2013)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037349.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      51201248..51213762
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005222826.5 → XP_005222883.1  NCK-interacting protein with SH3 domain isoform X1

      See identical proteins and their annotated locations for XP_005222883.1

      UniProtKB/TrEMBL
      A0AAA9SB48
      Related
      ENSBTAP00000082595.1, ENSBTAT00000126183.1
      Conserved Domains (2) summary
      cd11849
      Location:1 → 54
      SH3_SPIN90; Src homology 3 domain of SH3 protein interacting with Nck, 90 kDa (SPIN90)
      pfam09431
      Location:564 → 681
      DUF2013; Protein of unknown function (DUF2013)

    2. XM_024982706.2 → XP_024838474.1  NCK-interacting protein with SH3 domain isoform X2

      UniProtKB/TrEMBL
      A0AAA9SB48
      Conserved Domains (1) summary
      pfam09431
      Location:486 → 603
      DUF2013; Protein of unknown function (DUF2013)

    3. XM_059879660.1 → XP_059735643.1  NCK-interacting protein with SH3 domain isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version

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