U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    RPRD2 regulation of nuclear pre-mRNA domain containing 2 [ Bos taurus (domestic cattle) ]

    Gene ID: 614766, updated on 30-Jan-2025

    Summary

    Go to the top of the page Help
    Official Symbol
    RPRD2provided by VGNC
    Official Full Name
    regulation of nuclear pre-mRNA domain containing 2provided by VGNC
    Primary source
    VGNC:VGNC:34128
    See related
    BGD:BT29468; EnsemblRapid:ENSBTAG00070033207
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See RPRD2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 3 NC_037330.1 (20207537..20302030, complement)

    Chromosome 3 - NC_037330.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104971510 Neighboring gene extracellular matrix protein 1 Neighboring gene threonyl-tRNA synthetase 2, mitochondrial Neighboring gene protein-L-histidine N-pros-methyltransferase-like Neighboring gene pre-mRNA processing factor 3 Neighboring gene microRNA mir-12064

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037330.1 Chromosome 3 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II C-terminal domain binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    regulation of nuclear pre-mRNA domain-containing protein 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001206187.1 → NP_001193116.1  regulation of nuclear pre-mRNA domain-containing protein 2

      See identical proteins and their annotated locations for NP_001193116.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000003
      UniProtKB/TrEMBL
      A0AAA9S4T9
      Related
      ENSBTAP00070045731.1, ENSBTAT00070075028.1
      Conserved Domains (1) summary
      smart00582
      Location:26 → 145
      RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037330.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      20207537..20302030 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059884855.1 → XP_059740838.1  regulation of nuclear pre-mRNA domain-containing protein 2 isoform X6

      UniProtKB/TrEMBL
      A0AAA9S4T9

    2. XM_005203938.5 → XP_005203995.1  regulation of nuclear pre-mRNA domain-containing protein 2 isoform X3

      UniProtKB/TrEMBL
      A0AAA9S4T9, A0AAA9SRJ2
      Related
      ENSBTAP00070045704.1, ENSBTAT00070074995.1
      Conserved Domains (1) summary
      smart00582
      Location:26 → 145
      RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA

    3. XM_010803048.4 → XP_010801350.3  regulation of nuclear pre-mRNA domain-containing protein 2 isoform X2

      UniProtKB/TrEMBL
      A0AAA9S4T9

    4. XM_059884854.1 → XP_059740837.1  regulation of nuclear pre-mRNA domain-containing protein 2 isoform X5

      UniProtKB/TrEMBL
      A0AAA9S4T9, G3MX56
      Related
      ENSBTAP00070045660.1, ENSBTAT00070074945.1

    5. XM_024989703.2 → XP_024845471.2  regulation of nuclear pre-mRNA domain-containing protein 2 isoform X4

      UniProtKB/TrEMBL
      A0AAA9S4T9

    6. XM_010803047.4 → XP_010801349.3  regulation of nuclear pre-mRNA domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0AAA9S4T9, G3MZG3
      Related
      ENSBTAP00070045692.1, ENSBTAT00070074981.1

    7. XM_059884859.1 → XP_059740842.1  regulation of nuclear pre-mRNA domain-containing protein 2 isoform X11

    8. XM_010803049.4 → XP_010801351.1  regulation of nuclear pre-mRNA domain-containing protein 2 isoform X9

      Conserved Domains (4) summary
      smart00582
      Location:26 → 145
      RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
      cl00341
      Location:626 → 715
      IGPD; Imidazoleglycerol-phosphate dehydratase
      cl25496
      Location:293 → 619
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      cl25732
      Location:98 → 292
      SMC_N; RecF/RecN/SMC N terminal domain

    9. XM_059884858.1 → XP_059740841.1  regulation of nuclear pre-mRNA domain-containing protein 2 isoform X10

    10. XM_059884857.1 → XP_059740840.1  regulation of nuclear pre-mRNA domain-containing protein 2 isoform X8

    11. XM_059884856.1 → XP_059740839.1  regulation of nuclear pre-mRNA domain-containing protein 2 isoform X7

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.