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    PUS7 pseudouridine synthase 7 [ Bos taurus (domestic cattle) ]

    Gene ID: 615644, updated on 29-Jan-2025

    Summary

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    Official Symbol
    PUS7provided by VGNC
    Official Full Name
    pseudouridine synthase 7provided by VGNC
    Primary source
    VGNC:VGNC:54567
    See related
    BGD:BT18588; Ensembl:ENSBTAG00000007743
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See PUS7 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 4 NC_037331.1 (46586607..46640209, complement)

    Chromosome 4 - NC_037331.1Genomic Context describing neighboring genes Neighboring gene SRSF protein kinase 2 Neighboring gene large ribosomal subunit protein uL23-like Neighboring gene PRELI domain containing protein 3B-like Neighboring gene EF-hand calcium binding domain 10 Neighboring gene RAD50 interactor 1 Neighboring gene ataxin 7 like 1 Neighboring gene transfer RNA arginine (anticodon UCU)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037331.1 Chromosome 4 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC142717

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pseudouridine synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in pseudouridine synthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pseudouridylate synthase 7 homolog
    Names
    pseudouridylate synthase 7 (putative)
    NP_001070407.1
    XP_005205427.2
    XP_005205429.2
    XP_015324466.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001076939.1 → NP_001070407.1  pseudouridylate synthase 7 homolog

      See identical proteins and their annotated locations for NP_001070407.1

      Status: PROVISIONAL

      Source sequence(s)
      BC123723
      UniProtKB/Swiss-Prot
      Q08DI8
      UniProtKB/TrEMBL
      G3N0P5
      Related
      ENSBTAP00070030068.1, ENSBTAT00070050342.1
      Conserved Domains (2) summary
      cd02576
      Location:123 → 641
      PseudoU_synth_ScPUS7; Pseudouridine synthase, TruD family
      pfam01424
      Location:172 → 232
      R3H; R3H domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037331.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      46586607..46640209 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005205372.5 → XP_005205429.2  pseudouridylate synthase 7 homolog isoform X2

      UniProtKB/TrEMBL
      F1ML88
      Conserved Domains (1) summary
      cd02576
      Location:175 → 663
      PseudoU_synth_ScPUS7; Pseudouridine synthase, TruD family

    2. XM_005205370.5 → XP_005205427.2  pseudouridylate synthase 7 homolog isoform X1

      UniProtKB/TrEMBL
      F1ML88
      Conserved Domains (1) summary
      cd02576
      Location:175 → 699
      PseudoU_synth_ScPUS7; Pseudouridine synthase, TruD family

    3. XM_015468980.3 → XP_015324466.2  pseudouridylate synthase 7 homolog isoform X3

      UniProtKB/TrEMBL
      G3N0P5
      Conserved Domains (1) summary
      cd02576
      Location:122 → 646
      PseudoU_synth_ScPUS7; Pseudouridine synthase, TruD family
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q08DI8.1 GenPept UniProtKB/Swiss-Prot:Q08DI8

    Gene LinkOut

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