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    TM9SF5 transmembrane 9 superfamily member 5 [ Bos taurus (domestic cattle) ]

    Gene ID: 509946, updated on 27-Dec-2024

    Summary

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    Official Symbol
    TM9SF5provided by VGNC
    Official Full Name
    transmembrane 9 superfamily member 5provided by VGNC
    Primary source
    VGNC:VGNC:108947
    See related
    Ensembl:ENSBTAG00000054951
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
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    Genomic context

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    See TM9SF5 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) Unplaced Scaffold NW_020192292.1 (7943793..8024528, complement)

    NW_020192292.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112445826 Neighboring gene G protein-coupled receptor 101 Neighboring gene small nucleolar RNA SNORD61 Neighboring gene RNA binding motif protein X-linked Neighboring gene rho guanine nucleotide exchange factor 6-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020192292 Unplaced Scaffold Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC152009

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein localization to membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transmembrane 9 superfamily member 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001077895.1 → NP_001071363.1  transmembrane 9 superfamily member 5

      See identical proteins and their annotated locations for NP_001071363.1

      Status: PROVISIONAL

      Source sequence(s)
      BC126641
      UniProtKB/TrEMBL
      A0JNE2, E1BLA4
      Related
      ENSBTAP00000030265.5, ENSBTAT00000030280.6
      Conserved Domains (2) summary
      pfam02990
      Location:74 → 547
      EMP70; Endomembrane protein 70
      pfam07690
      Location:299 → 491
      MFS_1; Major Facilitator Superfamily

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NW_020192292.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      7943793..8024528 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059884532.1 → XP_059740515.1  transmembrane 9 superfamily member 5 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1LR79

    2. XM_024989328.2 → XP_024845096.1  transmembrane 9 superfamily member 5 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1LR79
      Conserved Domains (1) summary
      pfam02990
      Location:81 → 581
      EMP70; Endomembrane protein 70

    3. XM_024989327.2 → XP_024845095.1  transmembrane 9 superfamily member 5 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1LR79
      Related
      ENSBTAP00000059625.2, ENSBTAT00000071576.2
      Conserved Domains (1) summary
      pfam02990
      Location:81 → 621
      EMP70; Endomembrane protein 70

    4. XM_024989329.2 → XP_024845097.1  transmembrane 9 superfamily member 5 isoform X4

      UniProtKB/TrEMBL
      A0A3Q1MBL8, A0AAA9RSX2
      Related
      ENSBTAP00000068119.2, ENSBTAT00000070185.2
      Conserved Domains (1) summary
      pfam02990
      Location:81 → 549
      EMP70; Endomembrane protein 70

    RNA

    1. XR_003033819.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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