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    C1GALT1C1 C1GALT1 specific chaperone 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 531644, updated on 30-Jan-2025

    Summary

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    Gene symbol
    C1GALT1C1
    Gene description
    C1GALT1 specific chaperone 1
    See related
    BGD:BT14184; EnsemblRapid:ENSBTAG00070024627
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See C1GALT1C1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) X NC_037357.1 (5171522..5175572, complement)

    Chromosome X - NC_037357.1Genomic Context describing neighboring genes Neighboring gene insulin-like growth factor-binding protein 3 receptor Neighboring gene MCTS1 re-initiation and release factor Neighboring gene cancer/testis antigen family 47 member B1 Neighboring gene cancer/testis antigen 47A-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037357.1 Chromosome X Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Clone Names

    • MGC129054

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in core 1 O-glycan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    C1GALT1-specific chaperone 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034575.1 → NP_001029747.1  C1GALT1-specific chaperone 1

      See identical proteins and their annotated locations for NP_001029747.1

      Status: PROVISIONAL

      Source sequence(s)
      BC104496
      UniProtKB/Swiss-Prot
      Q3SX46
      Related
      ENSBTAP00070033537.1, ENSBTAT00070055687.1

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037357.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      5171522..5175572 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005227464.5 → XP_005227521.1  C1GALT1-specific chaperone 1 isoform X1

      See identical proteins and their annotated locations for XP_005227521.1

      UniProtKB/Swiss-Prot
      Q3SX46
      Related
      ENSBTAP00070033535.1, ENSBTAT00070055682.1

    2. XM_059883459.1 → XP_059739442.1  C1GALT1-specific chaperone 1 isoform X1

      UniProtKB/Swiss-Prot
      Q3SX46

    3. XM_059883460.1 → XP_059739443.1  C1GALT1-specific chaperone 1 isoform X1

      UniProtKB/Swiss-Prot
      Q3SX46
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3SX46.1 GenPept UniProtKB/Swiss-Prot:Q3SX46

    Gene LinkOut

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