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    SLC46A2 solute carrier family 46 member 2 [ Bos taurus (domestic cattle) ]

    Gene ID: 511556, updated on 27-Dec-2024

    Summary

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    Official Symbol
    SLC46A2provided by VGNC
    Official Full Name
    solute carrier family 46 member 2provided by VGNC
    Primary source
    VGNC:VGNC:34885
    See related
    Ensembl:ENSBTAG00000013670
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    TSCOT
    Orthologs
    human mouse all
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    Genomic context

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    See SLC46A2 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 8 NC_037335.1 (102117900..102201913, complement)

    Chromosome 8 - NC_037335.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein uL6 Neighboring gene INTS3 and NABP interacting protein Neighboring gene sorting nexin family member 30 Neighboring gene major allergen Equ c 1 Neighboring gene ZFP37 zinc finger protein Neighboring gene major allergen Equ c 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037335.1 Chromosome 8 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    solute carrier family 46 member 2
    Names
    thymic stromal co-transporter

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024519.1 → NP_001019690.1  solute carrier family 46 member 2

      Status: PROVISIONAL

      Source sequence(s)
      BT021767
      UniProtKB/TrEMBL
      A0AAA9SGS7, Q58D30
      Related
      ENSBTAP00000018168.4, ENSBTAT00000018168.6
      Conserved Domains (1) summary
      cl21472
      Location:84 → 451
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037335.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      102117900..102201913 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059889027.1 → XP_059745010.1  solute carrier family 46 member 2 isoform X1

      UniProtKB/TrEMBL
      A0AAA9SGS7, Q58D30

    2. XM_059889026.1 → XP_059745009.1  solute carrier family 46 member 2 isoform X1

      UniProtKB/TrEMBL
      A0AAA9SGS7, Q58D30
    Nucleotide Protein Strain
    Heading Accession and Version

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