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    RBM23 RNA binding motif protein 23 [ Bos taurus (domestic cattle) ]

    Gene ID: 513711, updated on 1-Jan-2025

    Summary

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    Official Symbol
    RBM23provided by VGNC
    Official Full Name
    RNA binding motif protein 23provided by VGNC
    Primary source
    VGNC:VGNC:52812
    See related
    BGD:BT13955; Ensembl:ENSBTAG00000038333
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human all
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    Genomic context

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    See RBM23 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 10 NC_037337.1 (21924903..21973074)

    Chromosome 10 - NC_037337.1Genomic Context describing neighboring genes Neighboring gene transfer RNA arginine (anticodon ACG) Neighboring gene protein arginine methyltransferase 5 Neighboring gene RRAD and GEM like GTPase 2 Neighboring gene LDL receptor related protein 10 Neighboring gene matrix metallopeptidase 14 Neighboring gene mitochondrial ribosomal protein L52 Neighboring gene solute carrier family 7 member 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037337.1 Chromosome 10 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC139382

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables U1 snRNP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable RNA-binding protein 23

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001075636.1 → NP_001069104.1  probable RNA-binding protein 23

      See identical proteins and their annotated locations for NP_001069104.1

      Status: PROVISIONAL

      Source sequence(s)
      BC122593
      UniProtKB/TrEMBL
      F1MY46, Q0IIK8
      Related
      ENSBTAP00000023525.4, ENSBTAT00000023525.5
      Conserved Domains (3) summary
      cd12283
      Location:182 → 254
      RRM1_RBM39_like; RNA recognition motif 1 in vertebrate RNA-binding protein 39 (RBM39) and similar proteins
      cd12284
      Location:280 → 352
      RRM2_RBM23_RBM39; RNA recognition motif 2 in vertebrate RNA-binding protein RBM23, RBM39 and similar proteins
      pfam15519
      Location:373 → 462
      RBM39linker; linker between RRM2 and RRM3 domains in RBM39 protein

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037337.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      21924903..21973074
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059890345.1 → XP_059746328.1  probable RNA-binding protein 23 isoform X3

      UniProtKB/TrEMBL
      A0AAA9SQM5

    2. XM_024997464.2 → XP_024853232.1  probable RNA-binding protein 23 isoform X3

      UniProtKB/TrEMBL
      A0AAA9SQM5
      Conserved Domains (1) summary
      cl25887
      Location:20 → 462
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

    3. XM_024997462.2 → XP_024853230.1  probable RNA-binding protein 23 isoform X3

      UniProtKB/TrEMBL
      A0AAA9SQM5
      Conserved Domains (1) summary
      cl25887
      Location:20 → 462
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

    4. XM_059890346.1 → XP_059746329.1  probable RNA-binding protein 23 isoform X4

      UniProtKB/TrEMBL
      A0AAA9SQM5

    5. XM_059890343.1 → XP_059746326.1  probable RNA-binding protein 23 isoform X1

      UniProtKB/TrEMBL
      A0AAA9SQM5

    6. XM_024997465.2 → XP_024853233.1  probable RNA-binding protein 23 isoform X3

      UniProtKB/TrEMBL
      A0AAA9SQM5
      Conserved Domains (1) summary
      cl25887
      Location:20 → 462
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

    7. XM_059890344.1 → XP_059746327.1  probable RNA-binding protein 23 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1LKV3
      Related
      ENSBTAP00000060316.2, ENSBTAT00000082396.2

    8. XM_059890347.1 → XP_059746330.1  probable RNA-binding protein 23 isoform X5

      UniProtKB/TrEMBL
      A0AAA9SQM5

    9. XM_024997468.2 → XP_024853236.2  probable RNA-binding protein 23 isoform X5

      UniProtKB/TrEMBL
      A0AAA9SQM5

    10. XM_059890348.1 → XP_059746331.1  probable RNA-binding protein 23 isoform X5

      UniProtKB/TrEMBL
      A0AAA9SQM5

    11. XM_059890349.1 → XP_059746332.1  probable RNA-binding protein 23 isoform X6

      UniProtKB/TrEMBL
      A0AAA9SUY4, F1MY46

    12. XM_059890350.1 → XP_059746333.1  probable RNA-binding protein 23 isoform X7

      UniProtKB/TrEMBL
      A0AAA9SUY4, F1MY46
      Related
      ENSBTAP00000089152.1, ENSBTAT00000113269.1

    13. XM_059890351.1 → XP_059746334.1  probable RNA-binding protein 23 isoform X8

      UniProtKB/TrEMBL
      A0AAA9T8W4, F1MY46
      Related
      ENSBTAP00000094421.1, ENSBTAT00000091932.1

    14. XM_010808913.4 → XP_010807215.3  probable RNA-binding protein 23 isoform X9

    RNA

    1. XR_009496028.1 RNA Sequence

    2. XR_009496027.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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