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    SGF29 SAGA complex associated factor 29 [ Bos taurus (domestic cattle) ]

    Gene ID: 510859, updated on 27-Dec-2024

    Summary

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    Official Symbol
    SGF29provided by VGNC
    Official Full Name
    SAGA complex associated factor 29provided by VGNC
    Primary source
    VGNC:VGNC:97311
    See related
    Ensembl:ENSBTAG00000016883
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    CCDC101
    Orthologs
    human mouse all
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    Genomic context

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    See SGF29 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 25 NC_037352.1 (26093202..26123452)

    Chromosome 25 - NC_037352.1Genomic Context describing neighboring genes Neighboring gene apolipoprotein B receptor Neighboring gene interleukin 27 Neighboring gene nuclear protein 1, transcriptional regulator Neighboring gene sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1 Neighboring gene bolA family member 2B Neighboring gene SLX1 homolog A, structure-specific endonuclease subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037352.1 Chromosome 25 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC134247

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables methylated histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SAGA complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SAGA-associated factor 29
    Names
    coiled-coil domain containing 101

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001075472.2 → NP_001068940.2  SAGA-associated factor 29

      See identical proteins and their annotated locations for NP_001068940.2

      Status: VALIDATED

      Source sequence(s)
      BC109630, DT841368
      UniProtKB/TrEMBL
      A0AAA9TNL9, E1BN74
      Related
      ENSBTAP00000022457.6, ENSBTAT00000022457.7
      Conserved Domains (1) summary
      pfam07039
      Location:158 → 288
      DUF1325; SGF29 tudor-like domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037352.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      26093202..26123452
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024984770.1 → XP_024840538.1  SAGA-associated factor 29 isoform X2

      UniProtKB/TrEMBL
      A0AAA9TIV5, A0AAA9TNL9
      Related
      ENSBTAP00000098388.1, ENSBTAT00000100175.1
      Conserved Domains (1) summary
      pfam07039
      Location:164 → 294
      DUF1325; SGF29 tudor-like domain

    2. XM_059881240.1 → XP_059737223.1  SAGA-associated factor 29 isoform X1

      UniProtKB/TrEMBL
      A0AAA9TNL9

    3. XM_024984772.2 → XP_024840540.1  SAGA-associated factor 29 isoform X3

      UniProtKB/TrEMBL
      Q32LD8
      Conserved Domains (1) summary
      pfam07039
      Location:118 → 248
      DUF1325; SGF29 tudor-like domain
    Nucleotide Protein Strain
    Heading Accession and Version

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