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    BTBD1 BTB domain containing 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 525916, updated on 30-Jan-2025

    Summary

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    Official Symbol
    BTBD1provided by VGNC
    Official Full Name
    BTB domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:26583
    See related
    BGD:BT23412; EnsemblRapid:ENSBTAG00070008652
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See BTBD1 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 21 NC_037348.1 (24995357..25047183)

    Chromosome 21 - NC_037348.1Genomic Context describing neighboring genes Neighboring gene HDGF like 3 Neighboring gene transmembrane 6 superfamily member 1 Neighboring gene uncharacterized LOC132343345 Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene tubulin alpha-1A chain-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037348.1 Chromosome 21 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC157166

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in neurogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BTB/POZ domain-containing protein 1
    Names
    BTB (POZ) domain containing 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001098060.2 → NP_001091529.1  BTB/POZ domain-containing protein 1

      See identical proteins and their annotated locations for NP_001091529.1

      Status: PROVISIONAL

      Source sequence(s)
      BC140696
      UniProtKB/TrEMBL
      A5D7V6
      Related
      ENSBTAP00070011565.1, ENSBTAT00070019536.1
      Conserved Domains (4) summary
      smart00225
      Location:88 → 175
      BTB; Broad-Complex, Tramtrack and Bric a brac
      smart00875
      Location:187 → 286
      BACK; BTB And C-terminal Kelch
      pfam00651
      Location:61 → 171
      BTB; BTB/POZ domain
      pfam08005
      Location:334 → 480
      PHR; PHR domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037348.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      24995357..25047183
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024981800.2 → XP_024837568.1  BTB/POZ domain-containing protein 1 isoform X2

      Conserved Domains (3) summary
      smart00875
      Location:202 → 301
      BACK; BTB And C-terminal Kelch
      pfam00651
      Location:61 → 175
      BTB; BTB/POZ domain
      pfam08005
      Location:349 → 445
      PHR; PHR domain

    2. XM_024981799.2 → XP_024837567.1  BTB/POZ domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      F1MZA8
      Related
      ENSBTAP00070011549.1, ENSBTAT00070019516.1
      Conserved Domains (3) summary
      smart00875
      Location:202 → 301
      BACK; BTB And C-terminal Kelch
      pfam00651
      Location:61 → 175
      BTB; BTB/POZ domain
      pfam08005
      Location:349 → 495
      PHR; PHR domain

    3. XM_005221883.4 → XP_005221940.2  BTB/POZ domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0AAA9SVZ1
      Conserved Domains (3) summary
      smart00875
      Location:187 → 286
      BACK; BTB And C-terminal Kelch
      pfam00651
      Location:61 → 175
      BTB; BTB/POZ domain
      pfam08005
      Location:334 → 430
      PHR; PHR domain
    Nucleotide Protein Strain
    Heading Accession and Version

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