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    RBM5 RNA binding motif protein 5 [ Bos taurus (domestic cattle) ]

    Gene ID: 534216, updated on 29-Jan-2025

    Summary

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    Official Symbol
    RBM5provided by VGNC
    Official Full Name
    RNA binding motif protein 5provided by VGNC
    Primary source
    VGNC:VGNC:33806
    See related
    BGD:BT14654; Ensembl:ENSBTAG00000006330
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    LUCA15
    Orthologs
    human mouse all
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    Genomic context

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    See RBM5 in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 22 NC_037349.1 (50218548..50242692, complement)

    Chromosome 22 - NC_037349.1Genomic Context describing neighboring genes Neighboring gene G protein subunit alpha transducin 1 Neighboring gene semaphorin 3F Neighboring gene U6 spliceosomal RNA Neighboring gene RNA binding motif protein 6 Neighboring gene basic proline-rich protein-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037349.1 Chromosome 22 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC137881

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding protein 5
    Names
    G15 protein
    putative tumor suppressor LUCA15
    tumor suppressor LUCA15

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001046374.1 → NP_001039839.1  RNA-binding protein 5

      See identical proteins and their annotated locations for NP_001039839.1

      Status: PROVISIONAL

      Source sequence(s)
      BC114706
      UniProtKB/Swiss-Prot
      Q1RMU5
      UniProtKB/TrEMBL
      A0AAA9SNW6
      Related
      ENSBTAP00070043183.1, ENSBTAT00070070785.1
      Conserved Domains (7) summary
      cd12752
      Location:93 → 179
      RRM1_RBM5; RNA recognition motif 1 in vertebrate RNA-binding protein 5 (RBM5)
      cd12755
      Location:229 → 314
      RRM2_RBM5; RNA recognition motif 2 in vertebrate RNA-binding protein 5 (RBM5)
      sd00025
      Location:185 → 204
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam00641
      Location:181 → 210
      zf-RanBP; Zn-finger in Ran binding protein and others
      cd16074
      Location:460 → 467
      OCRE; OCRE repeat 1 [structural motif]
      cl23757
      Location:455 → 510
      OCRE; OCRE domain
      pfam01585
      Location:743 → 787
      G-patch; G-patch domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037349.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      50218548..50242692 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059879754.1 → XP_059735737.1  RNA-binding protein 5 isoform X1

      UniProtKB/TrEMBL
      A0AAA9RY93
      Related
      ENSBTAP00070043149.1, ENSBTAT00070070739.1
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1RMU5.1 GenPept UniProtKB/Swiss-Prot:Q1RMU5

    Gene LinkOut

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