U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CLPTM1 CLPTM1 regulator of GABA type A receptor forward trafficking [ Bos taurus (domestic cattle) ]

    Gene ID: 618037, updated on 29-Jan-2025

    Summary

    Official Symbol
    CLPTM1provided by VGNC
    Official Full Name
    CLPTM1 regulator of GABA type A receptor forward traffickingprovided by VGNC
    Primary source
    VGNC:VGNC:27460
    See related
    Ensembl:ENSBTAG00000020560
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See CLPTM1 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 18 NC_037345.1 (52663768..52691346)

    Chromosome 18 - NC_037345.1Genomic Context describing neighboring genes Neighboring gene apolipoprotein C4 Neighboring gene apolipoprotein C2 Neighboring gene RELB proto-oncogene, NF-kB subunit Neighboring gene CLK4 associating serine/arginine rich protein

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_037345.1 Chromosome 18 Reference ARS-UCD2.0 Primary Assembly

    Expression

    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    General protein information

    Preferred Names
    putative lipid scramblase CLPTM1
    Names
    CLPTM1, transmembrane protein
    cleft lip and palate associated transmembrane protein 1
    cleft lip and palate transmembrane protein 1 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001046613.1NP_001040078.1  putative lipid scramblase CLPTM1

      See identical proteins and their annotated locations for NP_001040078.1

      Status: PROVISIONAL

      Source sequence(s)
      BC111212
      UniProtKB/Swiss-Prot
      Q2NL17
      UniProtKB/TrEMBL
      A0AAA9SG75
      Related
      ENSBTAP00070019524.1, ENSBTAT00070033186.1
      Conserved Domains (1) summary
      pfam05602
      Location:60496
      CLPTM1; Cleft lip and palate transmembrane protein 1 (CLPTM1)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037345.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      52663768..52691346
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)