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    TCEA3 transcription elongation factor A3 [ Bos taurus (domestic cattle) ]

    Gene ID: 533803, updated on 29-Jan-2025

    Summary

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    Official Symbol
    TCEA3provided by VGNC
    Official Full Name
    transcription elongation factor A3provided by VGNC
    Primary source
    VGNC:VGNC:35681
    See related
    BGD:BT30257; Ensembl:ENSBTAG00000038865
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See TCEA3 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (129422577..129468347)

    Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene E2F transcription factor 2 Neighboring gene ArfGAP with SH3 domain, ankyrin repeat and PH domain 3 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC132343457 Neighboring gene uncharacterized LOC132343456 Neighboring gene zinc finger protein 436

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Effect of TCEA3 on the differentiation of bovine skeletal muscle satellite cells. Zhu Y, et al. Biochem Biophys Res Commun, 2017 Mar 18. PMID 28161635
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC137536

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription elongation factor A protein 3
    Names
    transcription elongation factor A (SII), 3
    transcription elongation factor S-II protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001046360.1 → NP_001039825.1  transcription elongation factor A protein 3

      See identical proteins and their annotated locations for NP_001039825.1

      Status: PROVISIONAL

      Source sequence(s)
      BC112812
      UniProtKB/Swiss-Prot
      Q2KI09
      UniProtKB/TrEMBL
      A0A3Q1LKC9
      Related
      ENSBTAP00070010363.1, ENSBTAT00070017787.1
      Conserved Domains (1) summary
      cl02637
      Location:5 → 349
      TFIIS_M; Transcription factor S-II (TFIIS), central domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      129422577..129468347
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059875197.1 → XP_059731180.1  transcription elongation factor A protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1LKC9

    2. XM_059875199.1 → XP_059731182.1  transcription elongation factor A protein 3 isoform X2

      UniProtKB/Swiss-Prot
      Q2KI09
      UniProtKB/TrEMBL
      A0A3Q1LKC9
      Related
      ENSBTAP00070010386.1, ENSBTAT00070017821.1

    RNA

    1. XR_009490746.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2KI09.1 GenPept UniProtKB/Swiss-Prot:Q2KI09

    Gene LinkOut

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    Research Materials