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    RBM47 RNA binding motif protein 47 [ Bos taurus (domestic cattle) ]

    Gene ID: 540831, updated on 27-Dec-2024

    Summary

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    Official Symbol
    RBM47provided by VGNC
    Official Full Name
    RNA binding motif protein 47provided by VGNC
    Primary source
    VGNC:VGNC:33804
    See related
    BGD:BT20007; Ensembl:ENSBTAG00000002356
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See RBM47 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 6 NC_037333.1 (59387155..59663515, complement)

    Chromosome 6 - NC_037333.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112447071 Neighboring gene cholinergic receptor nicotinic alpha 9 subunit Neighboring gene uncharacterized LOC104968867 Neighboring gene NOP2/Sun RNA methyltransferase family member 7 Neighboring gene large ribosomal subunit protein eL8-like Neighboring gene amyloid beta precursor protein binding family B member 2 Neighboring gene transfer RNA glutamic acid (anticodon UUC)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037333.1 Chromosome 6 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index. Sonstegard TS, et al. Mamm Genome, 2002 Jul. PMID 12140684
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding protein 47

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001206034.1 → NP_001192963.1  RNA-binding protein 47

      See identical proteins and their annotated locations for NP_001192963.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000006
      UniProtKB/TrEMBL
      A0A3Q1LLQ5, A5D9E0
      Conserved Domains (1) summary
      TIGR01648
      Location:18 → 591
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037333.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      59387155..59663515 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024993385.2 → XP_024849153.1  RNA-binding protein 47 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1LLQ5, A5D9E0
      Conserved Domains (1) summary
      TIGR01648
      Location:18 → 591
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

    2. XM_005207883.5 → XP_005207940.1  RNA-binding protein 47 isoform X3

      See identical proteins and their annotated locations for XP_005207940.1

      UniProtKB/TrEMBL
      A0A3Q1LLQ5, A5D9E0
      Related
      ENSBTAP00000057526.1, ENSBTAT00000073219.2
      Conserved Domains (1) summary
      TIGR01648
      Location:18 → 591
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

    3. XM_059887634.1 → XP_059743617.1  RNA-binding protein 47 isoform X4

      Related
      ENSBTAP00000003040.5, ENSBTAT00000003040.6

    4. XM_059887633.1 → XP_059743616.1  RNA-binding protein 47 isoform X2

      UniProtKB/TrEMBL
      A5D9E0

    5. XM_059887618.1 → XP_059743601.1  RNA-binding protein 47 isoform X1

      UniProtKB/TrEMBL
      A5D9E0

    6. XM_059887630.1 → XP_059743613.1  RNA-binding protein 47 isoform X1

      UniProtKB/TrEMBL
      A5D9E0

    7. XM_059887626.1 → XP_059743609.1  RNA-binding protein 47 isoform X1

      UniProtKB/TrEMBL
      A5D9E0

    8. XM_059887628.1 → XP_059743611.1  RNA-binding protein 47 isoform X1

      UniProtKB/TrEMBL
      A5D9E0

    9. XM_059887629.1 → XP_059743612.1  RNA-binding protein 47 isoform X1

      UniProtKB/TrEMBL
      A5D9E0

    10. XM_059887625.1 → XP_059743608.1  RNA-binding protein 47 isoform X1

      UniProtKB/TrEMBL
      A5D9E0

    11. XM_059887620.1 → XP_059743603.1  RNA-binding protein 47 isoform X1

      UniProtKB/TrEMBL
      A5D9E0

    12. XM_059887622.1 → XP_059743605.1  RNA-binding protein 47 isoform X1

      UniProtKB/TrEMBL
      A5D9E0

    13. XM_059887621.1 → XP_059743604.1  RNA-binding protein 47 isoform X1

      UniProtKB/TrEMBL
      A5D9E0

    14. XM_059887619.1 → XP_059743602.1  RNA-binding protein 47 isoform X1

      UniProtKB/TrEMBL
      A5D9E0

    15. XM_059887623.1 → XP_059743606.1  RNA-binding protein 47 isoform X1

      UniProtKB/TrEMBL
      A5D9E0

    16. XM_059887624.1 → XP_059743607.1  RNA-binding protein 47 isoform X1

      UniProtKB/TrEMBL
      A5D9E0

    17. XM_059887631.1 → XP_059743614.1  RNA-binding protein 47 isoform X1

      UniProtKB/TrEMBL
      A5D9E0

    18. XM_059887632.1 → XP_059743615.1  RNA-binding protein 47 isoform X1

      UniProtKB/TrEMBL
      A5D9E0
    Nucleotide Protein Strain
    Heading Accession and Version

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