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    FOXRED1 FAD dependent oxidoreductase domain containing 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 510097, updated on 1-Jan-2025

    Summary

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    Official Symbol
    FOXRED1provided by VGNC
    Official Full Name
    FAD dependent oxidoreductase domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:29106
    See related
    BGD:BT26700; Ensembl:ENSBTAG00000014122
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    H17
    Orthologs
    human mouse all
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    Genomic context

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    See FOXRED1 in Genome Data Viewer
    Location:
    chromosome: 29
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 29 NC_037356.1 (29617419..29625087)

    Chromosome 29 - NC_037356.1Genomic Context describing neighboring genes Neighboring gene RNA pseudouridine synthase D4 Neighboring gene family with sequence similarity 118 member B Neighboring gene SRP receptor subunit alpha Neighboring gene TIR domain containing adaptor protein Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene ferritin light chain-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037356.1 Chromosome 29 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC140470

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrial respiratory chain complex I assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    FAD-dependent oxidoreductase domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034371.3 → NP_001029543.2  FAD-dependent oxidoreductase domain-containing protein 1

      See identical proteins and their annotated locations for NP_001029543.2

      Status: PROVISIONAL

      Source sequence(s)
      BC120036
      UniProtKB/Swiss-Prot
      Q58CP5, Q5EA45, Q5EAA3
      UniProtKB/TrEMBL
      A0A452DJZ0
      Related
      ENSBTAP00000030261.5, ENSBTAT00000030276.5
      Conserved Domains (1) summary
      COG0665
      Location:77 → 475
      DadA; Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism]

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037356.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      29617419..29625087
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5EA45.1 GenPept UniProtKB/Swiss-Prot:Q5EA45

    Gene LinkOut

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    Research Materials