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    EVA1C eva-1 homolog C [ Bos taurus (domestic cattle) ]

    Gene ID: 516536, updated on 27-Dec-2024

    Summary

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    Official Symbol
    EVA1Cprovided by VGNC
    Official Full Name
    eva-1 homolog Cprovided by VGNC
    Primary source
    VGNC:VGNC:28633
    See related
    BGD:BT13969; Ensembl:ENSBTAG00000017310
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    C1H21orf63
    Orthologs
    human mouse all
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    Genomic context

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    See EVA1C in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 1 NC_037328.1 (2936580..3081782, complement)

    Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein eL34-like Neighboring gene synaptojanin 1 Neighboring gene cilia and flagella associated protein 298 Neighboring gene uncharacterized LOC104970779 Neighboring gene URB1 ribosome biogenesis homolog Neighboring gene melanocortin 2 receptor accessory protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037328.1 Chromosome 1 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC155009

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables heparin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein eva-1 homolog C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001199027.1 → NP_001185956.1  protein eva-1 homolog C

      See identical proteins and their annotated locations for NP_001185956.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000001
      UniProtKB/TrEMBL
      A0A3Q1LMN4, A0AAA9T460
      Related
      ENSBTAP00000058143.2, ENSBTAT00000079419.2
      Conserved Domains (2) summary
      pfam02140
      Location:75 → 158
      Gal_Lectin; Galactose binding lectin domain
      pfam14851
      Location:301 → 441
      FAM176; FAM176 family

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037328.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      2936580..3081782 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059883498.1 → XP_059739481.1  protein eva-1 homolog C isoform X1

      UniProtKB/TrEMBL
      A0AAA9S0Q5
      Related
      ENSBTAP00000077220.1, ENSBTAT00000089323.1

    2. XM_024988259.2 → XP_024844027.1  protein eva-1 homolog C isoform X4

      Conserved Domains (1) summary
      pfam02140
      Location:75 → 158
      Gal_Lectin; Galactose binding lectin domain

    3. XM_024988157.2 → XP_024843925.1  protein eva-1 homolog C isoform X2

      Conserved Domains (1) summary
      pfam02140
      Location:75 → 158
      Gal_Lectin; Galactose binding lectin domain

    4. XM_024988220.2 → XP_024843988.1  protein eva-1 homolog C isoform X7

      UniProtKB/TrEMBL
      A0AAA9TCL8
      Conserved Domains (2) summary
      pfam02140
      Location:26 → 109
      Gal_Lectin; Galactose binding lectin domain
      pfam14851
      Location:252 → 392
      FAM176; FAM176 family

    5. XM_024988356.2 → XP_024844124.1  protein eva-1 homolog C isoform X6

      UniProtKB/TrEMBL
      A0A3Q1LPY6, A0AAF6DM64
      Related
      ENSBTAP00000023019.7, ENSBTAT00000023019.7
      Conserved Domains (2) summary
      pfam02140
      Location:69 → 152
      Gal_Lectin; Galactose binding lectin domain
      pfam14851
      Location:194 → 334
      FAM176; FAM176 family

    6. XM_010800898.4 → XP_010799200.1  protein eva-1 homolog C isoform X3

      UniProtKB/TrEMBL
      A0A3Q1LUI5, A0AAA9T460
      Related
      ENSBTAP00000060797.1, ENSBTAT00000076182.2
      Conserved Domains (2) summary
      pfam02140
      Location:75 → 158
      Gal_Lectin; Galactose binding lectin domain
      pfam14851
      Location:253 → 393
      FAM176; FAM176 family

    7. XM_010800900.4 → XP_010799202.1  protein eva-1 homolog C isoform X5

      UniProtKB/TrEMBL
      A0AAA9T460
      Conserved Domains (2) summary
      pfam02140
      Location:75 → 158
      Gal_Lectin; Galactose binding lectin domain
      pfam14851
      Location:260 → 384
      FAM176; FAM176 family

    RNA

    1. XR_009493455.1 RNA Sequence

    2. XR_009493453.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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