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    SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 537412, updated on 1-Jan-2025

    Summary

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    Official Symbol
    SMARCB1provided by VGNC
    Official Full Name
    SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1provided by VGNC
    Primary source
    VGNC:VGNC:34991
    See related
    BGD:BT15520; Ensembl:ENSBTAG00000009988
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SMARCB1 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 17 NC_037344.1 (71241939..71259044)

    Chromosome 17 - NC_037344.1Genomic Context describing neighboring genes Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 10 Neighboring gene matrix metallopeptidase 11 Neighboring gene derlin 3 Neighboring gene solute carrier family 2 member 11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037344.1 Chromosome 17 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index. Sonstegard TS, et al. Mamm Genome, 2002 Jul. PMID 12140684
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of pseudohyphal growth by positive regulation of transcription from RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of brahma complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nBAF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of npBAF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nuclear chromosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
    Names
    BAF47
    BRG1-associated factor 47

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001040557.2 → NP_001035647.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1

      See identical proteins and their annotated locations for NP_001035647.1

      Status: PROVISIONAL

      Source sequence(s)
      BC133572
      UniProtKB/Swiss-Prot
      A2VE50, Q5BIN2
      UniProtKB/TrEMBL
      A0A3Q1N9F8
      Related
      ENSBTAP00000013170.5, ENSBTAT00000013170.6
      Conserved Domains (1) summary
      pfam04855
      Location:181 → 363
      SNF5; SNF5 / SMARCB1 / INI1

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037344.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      71241939..71259044
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005218239.2 → XP_005218296.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1

      See identical proteins and their annotated locations for XP_005218296.1

      UniProtKB/TrEMBL
      A0A3Q1N9F8, Q29RY5
      Conserved Domains (2) summary
      pfam04855
      Location:172 → 354
      SNF5; SNF5 / SMARCB1 / INI1
      cd21086
      Location:9 → 98
      WH_NTD_SMARCB1; N-terminal winged helix DNA-binding domain found in SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 (SMARCB1) and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5BIN2.1 GenPept UniProtKB/Swiss-Prot:Q5BIN2

    Gene LinkOut

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