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    NOC2L NOC2 like nucleolar associated transcriptional repressor [ Bos taurus (domestic cattle) ]

    Gene ID: 508638, updated on 27-Dec-2024

    Summary

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    Official Symbol
    NOC2Lprovided by VGNC
    Official Full Name
    NOC2 like nucleolar associated transcriptional repressorprovided by VGNC
    Primary source
    VGNC:VGNC:32146
    See related
    BGD:BT16821; Ensembl:ENSBTAG00000016528
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See NOC2L in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 16 NC_037343.1 (51514453..51526322)

    Chromosome 16 - NC_037343.1Genomic Context describing neighboring genes Neighboring gene PPARGC1 and ESRR induced regulator, muscle 1 Neighboring gene pleckstrin homology domain containing N1 Neighboring gene kelch like family member 17 Neighboring gene sterile alpha motif domain containing 11 Neighboring gene transfer RNA tyrosine (anticodon AUA) Neighboring gene zinc finger and BTB domain containing 17

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037343.1 Chromosome 16 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Clone Names

    • MGC127410

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosomal large subunit biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Noc1p-Noc2p complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of Noc2p-Noc3p complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nucleolar complex protein 2 homolog
    Names
    NOC2-like protein
    novel INHAT repressor
    nucleolar complex associated 2 homolog
    protein NOC2 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034326.1 → NP_001029498.1  nucleolar complex protein 2 homolog

      See identical proteins and their annotated locations for NP_001029498.1

      Status: PROVISIONAL

      Source sequence(s)
      BC103386
      UniProtKB/Swiss-Prot
      Q3SYU1
      UniProtKB/TrEMBL
      A0AAA9TAJ3
      Conserved Domains (1) summary
      pfam03715
      Location:323 → 617
      Noc2; Noc2p family

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037343.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      51514453..51526322
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005217049.5 → XP_005217106.1  nucleolar complex protein 2 homolog isoform X1

      UniProtKB/TrEMBL
      A0AAA9TAJ3, A0AAF6Z2P7
      Related
      ENSBTAP00000021980.4, ENSBTAT00000021980.5
      Conserved Domains (1) summary
      pfam03715
      Location:331 → 625
      Noc2; Noc2p family

    2. XM_005217050.5 → XP_005217107.1  nucleolar complex protein 2 homolog isoform X2

      UniProtKB/TrEMBL
      A0AAA9TAJ3
      Related
      ENSBTAP00000093902.1, ENSBTAT00000119411.1
      Conserved Domains (1) summary
      pfam03715
      Location:330 → 624
      Noc2; Noc2p family

    3. XM_005217051.5 → XP_005217108.1  nucleolar complex protein 2 homolog isoform X3

      UniProtKB/TrEMBL
      A0AAA9TAJ3
      Conserved Domains (1) summary
      pfam03715
      Location:322 → 616
      Noc2; Noc2p family
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3SYU1.1 GenPept UniProtKB/Swiss-Prot:Q3SYU1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.