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    OTUD5 OTU deubiquitinase 5 [ Bos taurus (domestic cattle) ]

    Gene ID: 539145, updated on 29-Jan-2025

    Summary

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    Official Symbol
    OTUD5provided by VGNC
    Official Full Name
    OTU deubiquitinase 5provided by VGNC
    Primary source
    VGNC:VGNC:32496
    See related
    BGD:BT26960; Ensembl:ENSBTAG00000004600
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See OTUD5 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) X NC_037357.1 (87037324..87065339, complement)

    Chromosome X - NC_037357.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 35 member A2 Neighboring gene Pim-2 proto-oncogene, serine/threonine kinase Neighboring gene potassium voltage-gated channel subfamily D member 1 Neighboring gene GRIP1 associated protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037357.1 Chromosome X Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    OTU domain-containing protein 5
    Names
    OTU domain containing 5
    NP_001192567.1
    XP_005228209.1
    XP_005228210.1
    XP_005228212.1
    XP_010820213.1
    XP_024843934.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001205638.1 → NP_001192567.1  OTU domain-containing protein 5

      See identical proteins and their annotated locations for NP_001192567.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000030
      Conserved Domains (1) summary
      cl19932
      Location:221 → 335
      OTU; OTU-like cysteine protease

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037357.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      87037324..87065339 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010821911.4 → XP_010820213.1  OTU domain-containing protein 5 isoform X5

      See identical proteins and their annotated locations for XP_010820213.1

      Conserved Domains (1) summary
      cl19932
      Location:164 → 273
      OTU; OTU-like cysteine protease

    2. XM_024988166.2 → XP_024843934.1  OTU domain-containing protein 5 isoform X4

      Related
      ENSBTAP00070047256.1, ENSBTAT00070077484.1
      Conserved Domains (1) summary
      cl19932
      Location:165 → 274
      OTU; OTU-like cysteine protease

    3. XM_005228155.5 → XP_005228212.1  OTU domain-containing protein 5 isoform X3

      See identical proteins and their annotated locations for XP_005228212.1

      Conserved Domains (1) summary
      cl19932
      Location:165 → 274
      OTU; OTU-like cysteine protease

    4. XM_005228153.5 → XP_005228210.1  OTU domain-containing protein 5 isoform X2

      See identical proteins and their annotated locations for XP_005228210.1

      Conserved Domains (1) summary
      cl19932
      Location:221 → 330
      OTU; OTU-like cysteine protease

    5. XM_005228152.5 → XP_005228209.1  OTU domain-containing protein 5 isoform X1

      See identical proteins and their annotated locations for XP_005228209.1

      UniProtKB/TrEMBL
      E1BFW9
      Related
      ENSBTAP00070047292.1, ENSBTAT00070077520.1
      Conserved Domains (1) summary
      cl19932
      Location:221 → 330
      OTU; OTU-like cysteine protease
    Nucleotide Protein Strain
    Heading Accession and Version

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