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    RNPC3 RNA binding region (RNP1, RRM) containing 3 [ Bos taurus (domestic cattle) ]

    Gene ID: 768060, updated on 27-Dec-2024

    Summary

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    Gene symbol
    RNPC3
    Gene description
    RNA binding region (RNP1, RRM) containing 3
    See related
    Ensembl:ENSBTAG00000019091
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See RNPC3 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 3 NC_037330.1 (39834769..39883181, complement)

    Chromosome 3 - NC_037330.1Genomic Context describing neighboring genes Neighboring gene alpha-amylase 2B Neighboring gene amylase, alpha 2B (pancreatic) Neighboring gene uncharacterized LOC107132304 Neighboring gene uncharacterized LOC132344991

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037330.1 Chromosome 3 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC127854

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables U12 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pre-mRNA intronic binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U12-type spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding region-containing protein 3
    Names
    RNA-binding motif protein 40
    RNA-binding protein 40

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001077117.2 → NP_001070585.1  RNA-binding region-containing protein 3

      See identical proteins and their annotated locations for NP_001070585.1

      Status: PROVISIONAL

      Source sequence(s)
      BC105165
      UniProtKB/Swiss-Prot
      Q3MHP0
      UniProtKB/TrEMBL
      F1MJQ8
      Related
      ENSBTAP00000025416.6, ENSBTAT00000025416.7
      Conserved Domains (3) summary
      COG0724
      Location:332 → 510
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12238
      Location:28 → 100
      RRM1_RBM40_like; RNA recognition motif 1 in RNA-binding protein 40 (RBM40) and similar proteins
      cd12239
      Location:418 → 500
      RRM2_RBM40_like; RNA recognition motif 2 in RNA-binding protein 40 (RBM40) and similar proteins

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037330.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      39834769..39883181 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024989774.2 → XP_024845542.1  RNA-binding region-containing protein 3 isoform X2

      UniProtKB/TrEMBL
      F1MJQ8
      Conserved Domains (3) summary
      COG0724
      Location:316 → 494
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12238
      Location:28 → 100
      RRM1_RBM40_like; RNA recognition motif 1 in RNA-binding protein 40 (RBM40) and similar proteins
      cd12239
      Location:402 → 484
      RRM2_RBM40_like; RNA recognition motif 2 in RNA-binding protein 40 (RBM40) and similar proteins

    2. XM_010803233.4 → XP_010801535.1  RNA-binding region-containing protein 3 isoform X1

      See identical proteins and their annotated locations for XP_010801535.1

      UniProtKB/TrEMBL
      F1MJQ8
      Conserved Domains (3) summary
      COG0724
      Location:333 → 511
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12238
      Location:28 → 100
      RRM1_RBM40_like; RNA recognition motif 1 in RNA-binding protein 40 (RBM40) and similar proteins
      cd12239
      Location:419 → 501
      RRM2_RBM40_like; RNA recognition motif 2 in RNA-binding protein 40 (RBM40) and similar proteins

    3. XM_005204192.5 → XP_005204249.1  RNA-binding region-containing protein 3 isoform X1

      See identical proteins and their annotated locations for XP_005204249.1

      UniProtKB/TrEMBL
      F1MJQ8
      Conserved Domains (3) summary
      COG0724
      Location:333 → 511
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12238
      Location:28 → 100
      RRM1_RBM40_like; RNA recognition motif 1 in RNA-binding protein 40 (RBM40) and similar proteins
      cd12239
      Location:419 → 501
      RRM2_RBM40_like; RNA recognition motif 2 in RNA-binding protein 40 (RBM40) and similar proteins

    RNA

    1. XR_003033864.2 RNA Sequence

    2. XR_009493815.1 RNA Sequence

    3. XR_805455.4 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3MHP0.1 GenPept UniProtKB/Swiss-Prot:Q3MHP0

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials