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    PIDD1 p53-induced death domain protein 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 100137737, updated on 27-Dec-2024

    Summary

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    Official Symbol
    PIDD1provided by VGNC
    Official Full Name
    p53-induced death domain protein 1provided by VGNC
    Primary source
    VGNC:VGNC:32863
    See related
    Ensembl:ENSBTAG00000019634
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    LRDD; PIDD
    Orthologs
    human mouse all
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    Genomic context

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    See PIDD1 in Genome Data Viewer
    Location:
    chromosome: 29
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 29 NC_037356.1 (50559303..50567587)

    Chromosome 29 - NC_037356.1Genomic Context describing neighboring genes Neighboring gene patatin like phospholipase domain containing 2 Neighboring gene small nucleolar RNA SNORA52 Neighboring gene ribosomal protein lateral stalk subunit P2 Neighboring gene solute carrier family 25 member 22 Neighboring gene cell cycle exit and neuronal differentiation 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037356.1 Chromosome 29 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA damage response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    p53-induced death domain-containing protein 1
    Names
    leucine-rich repeats and death domain containing

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191487.1 → NP_001178416.1  p53-induced death domain-containing protein 1

      See identical proteins and their annotated locations for NP_001178416.1

      Status: VALIDATED

      Source sequence(s)
      DAAA02063757
      UniProtKB/TrEMBL
      A0AAA9SFH7
      Related
      ENSBTAP00000081211.1, ENSBTAT00000110892.1
      Conserved Domains (6) summary
      cd00116
      Location:130 → 282
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      cd08779
      Location:791 → 876
      Death_PIDD; Death Domain of p53-induced protein with a death domain
      sd00033
      Location:95 → 129
      LRR_RI; leucine-rich repeat [structural motif]
      pfam10461
      Location:424 → 456
      Peptidase_S68; Peptidase S68
      pfam13855
      Location:197 → 255
      LRR_8; Leucine rich repeat
      cl02517
      Location:328 → 401
      ZU5; ZU5 domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037356.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      50559303..50567587
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005227258.5 → XP_005227315.2  p53-induced death domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0AAA9SFH7, A0AAA9TWG4
      Related
      ENSBTAP00000101804.1, ENSBTAT00000105344.1
      Conserved Domains (5) summary
      COG4886
      Location:124 → 316
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd08779
      Location:824 → 909
      Death_PIDD; Death Domain of p53-induced protein with a death domain
      sd00033
      Location:128 → 162
      LRR_RI; leucine-rich repeat [structural motif]
      pfam10461
      Location:457 → 489
      Peptidase_S68; Peptidase S68
      cl02517
      Location:361 → 434
      ZU5; ZU5 domain

    2. XM_059882743.1 → XP_059738726.1  p53-induced death domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0AAA9SFH7

    3. XM_005227259.5 → XP_005227316.2  p53-induced death domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0AAA9SFH7
      Conserved Domains (5) summary
      COG4886
      Location:124 → 316
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd08779
      Location:817 → 902
      Death_PIDD; Death Domain of p53-induced protein with a death domain
      sd00033
      Location:128 → 162
      LRR_RI; leucine-rich repeat [structural motif]
      pfam10461
      Location:457 → 482
      Peptidase_S68; Peptidase S68
      cl02517
      Location:361 → 434
      ZU5; ZU5 domain

    4. XM_010821191.4 → XP_010819493.2  p53-induced death domain-containing protein 1 isoform X5

      UniProtKB/TrEMBL
      A0AAA9SFH7
      Conserved Domains (4) summary
      COG4886
      Location:124 → 316
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd08779
      Location:736 → 821
      Death_PIDD; Death Domain of p53-induced protein with a death domain
      sd00033
      Location:128 → 162
      LRR_RI; leucine-rich repeat [structural motif]
      cl02517
      Location:361 → 434
      ZU5; ZU5 domain

    5. XM_005227260.5 → XP_005227317.2  p53-induced death domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0AAA9SFH7, G5E5N0
      Conserved Domains (5) summary
      COG4886
      Location:91 → 283
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd08779
      Location:791 → 876
      Death_PIDD; Death Domain of p53-induced protein with a death domain
      sd00033
      Location:95 → 129
      LRR_RI; leucine-rich repeat [structural motif]
      pfam10461
      Location:424 → 456
      Peptidase_S68; Peptidase S68
      cl02517
      Location:328 → 401
      ZU5; ZU5 domain

    6. XM_005227261.5 → XP_005227318.2  p53-induced death domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0AAA9SFH7, G5E5N0
      Conserved Domains (5) summary
      COG4886
      Location:91 → 283
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd08779
      Location:791 → 876
      Death_PIDD; Death Domain of p53-induced protein with a death domain
      sd00033
      Location:95 → 129
      LRR_RI; leucine-rich repeat [structural motif]
      pfam10461
      Location:424 → 456
      Peptidase_S68; Peptidase S68
      cl02517
      Location:328 → 401
      ZU5; ZU5 domain

    7. XM_005227262.5 → XP_005227319.2  p53-induced death domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0AAA9SFH7, G5E5N0
      Related
      ENSBTAP00000026157.6, ENSBTAT00000026157.7
      Conserved Domains (5) summary
      COG4886
      Location:91 → 283
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd08779
      Location:791 → 876
      Death_PIDD; Death Domain of p53-induced protein with a death domain
      sd00033
      Location:95 → 129
      LRR_RI; leucine-rich repeat [structural motif]
      pfam10461
      Location:424 → 456
      Peptidase_S68; Peptidase S68
      cl02517
      Location:328 → 401
      ZU5; ZU5 domain

    8. XM_059882744.1 → XP_059738727.1  p53-induced death domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0AAA9SFH7, G5E5N0

    9. XM_024986950.2 → XP_024842718.1  p53-induced death domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0AAA9SFH7, G5E5N0
      Conserved Domains (5) summary
      COG4886
      Location:91 → 283
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd08779
      Location:791 → 876
      Death_PIDD; Death Domain of p53-induced protein with a death domain
      sd00033
      Location:95 → 129
      LRR_RI; leucine-rich repeat [structural motif]
      pfam10461
      Location:424 → 456
      Peptidase_S68; Peptidase S68
      cl02517
      Location:328 → 401
      ZU5; ZU5 domain

    10. XM_010821192.3 → XP_010819494.2  p53-induced death domain-containing protein 1 isoform X6

      Conserved Domains (5) summary
      COG4886
      Location:3 → 134
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd08779
      Location:642 → 727
      Death_PIDD; Death Domain of p53-induced protein with a death domain
      sd00033
      Location:7 → 26
      LRR_RI; leucine-rich repeat [structural motif]
      pfam10461
      Location:275 → 307
      Peptidase_S68; Peptidase S68
      cl02517
      Location:179 → 252
      ZU5; ZU5 domain

    RNA

    1. XR_001495470.3 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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