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    U2SURP U2 snRNP associated SURP domain containing [ Bos taurus (domestic cattle) ]

    Gene ID: 505019, updated on 30-Jan-2025

    Summary

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    Official Symbol
    U2SURPprovided by VGNC
    Official Full Name
    U2 snRNP associated SURP domain containingprovided by VGNC
    Primary source
    VGNC:VGNC:36557
    See related
    BGD:BT11309; EnsemblRapid:ENSBTAG00070002836
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    SR140
    Orthologs
    human mouse all
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    Genomic context

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    See U2SURP in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 1 NC_037328.1 (125933235..125986609, complement)

    Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112447746 Neighboring gene carbohydrate sulfotransferase 2 Neighboring gene transfer RNA serine (anticodon GGA) Neighboring gene progestin and adipoQ receptor family member 9 Neighboring gene ferritin light chain Neighboring gene procollagen C-endopeptidase enhancer 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037328.1 Chromosome 1 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • KIAA0332

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U2 snRNP-associated SURP motif-containing protein
    Names
    U2-associated SR140 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037328.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      125933235..125986609 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024996014.2 → XP_024851782.1  U2 snRNP-associated SURP motif-containing protein isoform X4

      Conserved Domains (5) summary
      smart00582
      Location:540 → 675
      RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
      COG0724
      Location:156 → 351
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12223
      Location:272 → 355
      RRM_SR140; RNA recognition motif (RRM) in U2-associated protein SR140 and similar proteins
      pfam01805
      Location:429 → 479
      Surp; Surp module
      pfam08312
      Location:842 → 883
      cwf21; cwf21 domain

    2. XM_005201897.5 → XP_005201954.1  U2 snRNP-associated SURP motif-containing protein isoform X2

      Conserved Domains (5) summary
      smart00582
      Location:540 → 675
      RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
      COG0724
      Location:156 → 351
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12223
      Location:272 → 355
      RRM_SR140; RNA recognition motif (RRM) in U2-associated protein SR140 and similar proteins
      pfam01805
      Location:429 → 479
      Surp; Surp module
      pfam08312
      Location:842 → 883
      cwf21; cwf21 domain

    3. XM_005201898.5 → XP_005201955.1  U2 snRNP-associated SURP motif-containing protein isoform X3

      UniProtKB/TrEMBL
      F1MHP1
      Related
      ENSBTAP00070003774.1, ENSBTAT00070006504.1
      Conserved Domains (5) summary
      smart00582
      Location:541 → 676
      RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
      COG0724
      Location:156 → 352
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12223
      Location:273 → 356
      RRM_SR140; RNA recognition motif (RRM) in U2-associated protein SR140 and similar proteins
      pfam01805
      Location:430 → 480
      Surp; Surp module
      pfam08312
      Location:843 → 884
      cwf21; cwf21 domain

    4. XM_002685036.6 → XP_002685082.1  U2 snRNP-associated SURP motif-containing protein isoform X1

      UniProtKB/TrEMBL
      A0AAA9SW45
      Related
      ENSBTAP00070003768.1, ENSBTAT00070006491.1
      Conserved Domains (5) summary
      smart00582
      Location:541 → 676
      RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
      COG0724
      Location:156 → 352
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12223
      Location:273 → 356
      RRM_SR140; RNA recognition motif (RRM) in U2-associated protein SR140 and similar proteins
      pfam01805
      Location:430 → 480
      Surp; Surp module
      pfam08312
      Location:843 → 884
      cwf21; cwf21 domain

    5. XM_059888926.1 → XP_059744909.1  U2 snRNP-associated SURP motif-containing protein isoform X5

    6. XM_059888929.1 → XP_059744912.1  U2 snRNP-associated SURP motif-containing protein isoform X6

    Nucleotide Protein Strain
    Heading Accession and Version

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