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    ZNHIT3 zinc finger HIT-type containing 3 [ Bos taurus (domestic cattle) ]

    Gene ID: 504662, updated on 29-Jan-2025

    Summary

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    Official Symbol
    ZNHIT3provided by VGNC
    Official Full Name
    zinc finger HIT-type containing 3provided by VGNC
    Primary source
    VGNC:VGNC:37360
    See related
    BGD:BT21239; Ensembl:ENSBTAG00000012672
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See ZNHIT3 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 19 NC_037346.1 (12843688..12850633)

    Chromosome 19 - NC_037346.1Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 32 Neighboring gene uncharacterized LOC132343008 Neighboring gene carbonic anhydrase 4 Neighboring gene small nucleolar RNA SNORA11 Neighboring gene myosin XIX Neighboring gene phosphatidylinositol glycan anchor biosynthesis class W

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037346.1 Chromosome 19 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC137225

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in box C/D snoRNP assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in snoRNA localization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of pre-snoRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger HIT domain-containing protein 3
    Names
    zinc finger, HIT type 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001045895.1 → NP_001039360.1  zinc finger HIT domain-containing protein 3

      See identical proteins and their annotated locations for NP_001039360.1

      Status: PROVISIONAL

      Source sequence(s)
      BC112640
      UniProtKB/Swiss-Prot
      Q2KIH1
      UniProtKB/TrEMBL
      A0AAA9RVA0
      Related
      ENSBTAP00070045589.1, ENSBTAT00070074854.1
      Conserved Domains (1) summary
      pfam04438
      Location:8 → 36
      zf-HIT; HIT zinc finger

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037346.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      12843688..12850633
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024979728.2 → XP_024835496.1  zinc finger HIT domain-containing protein 3 isoform X1

      UniProtKB/TrEMBL
      A0AAA9RVA0
      Conserved Domains (1) summary
      pfam04438
      Location:10 → 36
      zf-HIT; HIT zinc finger

    2. XM_059877804.1 → XP_059733787.1  zinc finger HIT domain-containing protein 3 isoform X3

    3. XM_010815748.4 → XP_010814050.1  zinc finger HIT domain-containing protein 3 isoform X2

      See identical proteins and their annotated locations for XP_010814050.1

      UniProtKB/TrEMBL
      A0AAA9RVA0
      Related
      ENSBTAP00070045620.1, ENSBTAT00070074895.1
      Conserved Domains (1) summary
      pfam04438
      Location:10 → 36
      zf-HIT; HIT zinc finger
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2KIH1.1 GenPept UniProtKB/Swiss-Prot:Q2KIH1

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