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    YBX3 Y-box binding protein 3 [ Bos taurus (domestic cattle) ]

    Gene ID: 533297, updated on 30-Jan-2025

    Summary

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    Official Symbol
    YBX3provided by VGNC
    Official Full Name
    Y-box binding protein 3provided by VGNC
    Primary source
    VGNC:VGNC:37018
    See related
    BGD:BT15794; EnsemblRapid:ENSBTAG00070029276
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    CSDA
    Orthologs
    human mouse all
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    Genomic context

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    See YBX3 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (98853392..98879065)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene taste 2 receptor member 7 Neighboring gene uncharacterized LOC132345338 Neighboring gene serine/threonine/tyrosine kinase 1 Neighboring gene mago homolog B, exon junction complex subunit

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC148333

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Y-box-binding protein 3
    Names
    Y-box protein
    cold shock domain protein A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001098074.1 → NP_001091543.1  Y-box-binding protein 3

      See identical proteins and their annotated locations for NP_001091543.1

      Status: PROVISIONAL

      Source sequence(s)
      BC140644
      UniProtKB/TrEMBL
      A5D7Q4
      Related
      ENSBTAP00070040543.1, ENSBTAT00070066509.1
      Conserved Domains (1) summary
      pfam00313
      Location:97 → 166
      CSD; 'Cold-shock' DNA-binding domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      98853392..98879065
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010805489.2 → XP_010803791.1  Y-box-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1LIJ0, A0A3Q1M1B2
      Related
      ENSBTAP00070040602.1, ENSBTAT00070066592.1
      Conserved Domains (1) summary
      pfam00313
      Location:195 → 264
      CSD; 'Cold-shock' DNA-binding domain

    2. XM_010805490.2 → XP_010803792.1  Y-box-binding protein 3 isoform X3

      Conserved Domains (1) summary
      pfam00313
      Location:195 → 264
      CSD; 'Cold-shock' DNA-binding domain

    3. XM_059886527.1 → XP_059742510.1  Y-box-binding protein 3 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1LIJ0
    Nucleotide Protein Strain
    Heading Accession and Version

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