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    HSPH1 heat shock protein family H (Hsp110) member 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 507165, updated on 27-Dec-2024

    Summary

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    Official Symbol
    HSPH1provided by VGNC
    Official Full Name
    heat shock protein family H (Hsp110) member 1provided by VGNC
    Primary source
    VGNC:VGNC:53817
    See related
    BGD:BT10050; Ensembl:ENSBTAG00000005012
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
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    Genomic context

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    See HSPH1 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 12 NC_037339.1 (29796159..29819631)

    Chromosome 12 - NC_037339.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132346751 Neighboring gene beta 3-glucosyltransferase Neighboring gene uncharacterized LOC132346752 Neighboring gene uncharacterized LOC132346753 Neighboring gene uncharacterized LOC132346754

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037339.1 Chromosome 12 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC137965

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent protein folding chaperone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heat shock protein 105 kDa
    Names
    heat shock 105kDa/110kDa protein 1
    heat shock 110 kDa protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001075302.1 → NP_001068770.1  heat shock protein 105 kDa

      See identical proteins and their annotated locations for NP_001068770.1

      Status: PROVISIONAL

      Source sequence(s)
      BC122574
      UniProtKB/Swiss-Prot
      Q0IIM3
      UniProtKB/TrEMBL
      A0AAA9S0C0
      Related
      ENSBTAP00000006600.2, ENSBTAT00000006600.3
      Conserved Domains (2) summary
      cd11739
      Location:2 → 384
      HSPH1_NBD; Nucleotide-binding domain of HSPH1
      pfam00012
      Location:3 → 709
      HSP70; Hsp70 protein

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037339.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      29796159..29819631
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005213576.5 → XP_005213633.1  heat shock protein 105 kDa isoform X1

      UniProtKB/TrEMBL
      A0AAA9S0C0, A0AAA9TUS7
      Related
      ENSBTAP00000100335.1, ENSBTAT00000135012.1
      Conserved Domains (2) summary
      cd11739
      Location:2 → 384
      HSPH1_NBD; Nucleotide-binding domain of HSPH1
      pfam00012
      Location:3 → 665
      HSP70; Hsp70 protein
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0IIM3.1 GenPept UniProtKB/Swiss-Prot:Q0IIM3

    Gene LinkOut

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