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    SPON1 spondin 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 282866, updated on 27-Dec-2024

    Summary

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    Official Symbol
    SPON1provided by VGNC
    Official Full Name
    spondin 1provided by VGNC
    Primary source
    VGNC:VGNC:35227
    See related
    BGD:BT12852; Ensembl:ENSBTAG00000009150
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
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    Genomic context

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    See SPON1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 15 NC_037342.1 (38457984..38773001, complement)

    Chromosome 15 - NC_037342.1Genomic Context describing neighboring genes Neighboring gene ferritin heavy chain 1 pseudogene Neighboring gene RAS related 2 Neighboring gene pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene microRNA mir-2284t Neighboring gene small ribosomal subunit protein eS24-like Neighboring gene fatty acyl-CoA reductase 1 Neighboring gene microRNA mir-2285b-1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037342.1 Chromosome 15 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Isolation and characterization of vascular smooth muscle cell growth promoting factor from bovine ovarian follicular fluid and its cDNA cloning from bovine and human ovary. Miyamoto K, et al. Arch Biochem Biophys, 2001 Jun 1. PMID 11368520
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC142579

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    spondin-1
    Names
    F-spondin
    spondin 1, (f-spondin) extracellular matrix protein
    spondin 1, extracellular matrix protein
    vascular smooth muscle cell growth-promoting factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_174743.2 → NP_777168.1  spondin-1 precursor

      See identical proteins and their annotated locations for NP_777168.1

      Status: PROVISIONAL

      Source sequence(s)
      AB051389
      UniProtKB/Swiss-Prot
      Q9GLX9
      UniProtKB/TrEMBL
      A0A3Q1MVH8
      Related
      ENSBTAP00000012059.5, ENSBTAT00000012059.6
      Conserved Domains (3) summary
      cd08544
      Location:43 → 182
      Reeler; Reeler, the N-terminal domain of reelin, F-spondin, and a variety of other proteins
      pfam00090
      Location:562 → 610
      TSP_1; Thrombospondin type 1 domain
      pfam06468
      Location:205 → 392
      Spond_N; Spondin_N

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037342.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      38457984..38773001 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9GLX9.1 GenPept UniProtKB/Swiss-Prot:Q9GLX9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.