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    IFFO1 intermediate filament family orphan 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 506821, updated on 29-Jan-2025

    Summary

    Official Symbol
    IFFO1provided by VGNC
    Official Full Name
    intermediate filament family orphan 1provided by VGNC
    Primary source
    VGNC:VGNC:30042
    See related
    BGD:BT14961; Ensembl:ENSBTAG00000030369
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    IFFO
    Orthologs
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    Genomic context

    See IFFO1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (103857453..103869612)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene chromodomain helicase DNA binding protein 4 Neighboring gene uncharacterized LOC112446759 Neighboring gene NOP2 nucleolar protein Neighboring gene glyceraldehyde-3-phosphate dehydrogenase Neighboring gene non-SMC condensin I complex subunit D2 Neighboring gene microRNA mir-2424

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    Expression

    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    General gene information

    Markers

    Clone Names

    • MGC151662

    General protein information

    Preferred Names
    non-homologous end joining factor IFFO1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001083380.2NP_001076849.2  non-homologous end joining factor IFFO1 isoform 1

      Status: VALIDATED

      Source sequence(s)
      NKLS02000005
    2. NM_001434859.1NP_001421788.1  non-homologous end joining factor IFFO1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      NKLS02000005

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      103857453..103869612
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005207116.5XP_005207173.1  non-homologous end joining factor IFFO1 isoform X4

      UniProtKB/TrEMBL
      A0AAA9RZA1, A0AAF6DLZ2
      Related
      ENSBTAP00070036995.1, ENSBTAT00070062075.1
      Conserved Domains (1) summary
      pfam00038
      Location:230529
      Filament; Intermediate filament protein
    2. XM_005207123.5XP_005207180.1  non-homologous end joining factor IFFO1 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1NFW1
      Conserved Domains (1) summary
      pfam00038
      Location:230517
      Filament; Intermediate filament protein
    3. XM_059886210.1XP_059742193.1  non-homologous end joining factor IFFO1 isoform X1