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    PDLIM7 PDZ and LIM domain 7 [ Bos taurus (domestic cattle) ]

    Gene ID: 533851, updated on 27-Dec-2024

    Summary

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    Official Symbol
    PDLIM7provided by VGNC
    Official Full Name
    PDZ and LIM domain 7provided by VGNC
    Primary source
    VGNC:VGNC:32712
    See related
    BGD:BT11381; Ensembl:ENSBTAG00000069499
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See PDLIM7 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 7 NC_037334.1 (38975500..38995593, complement)

    Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene proline rich 7, synaptic Neighboring gene drebrin 1 Neighboring gene docking protein 3 Neighboring gene DEAD-box helicase 41

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037334.1 Chromosome 7 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index. Sonstegard TS, et al. Mamm Genome, 2002 Jul. PMID 12140684
    2. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    3. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    4. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables muscle alpha-actinin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in heart development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in muscle structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Z disc IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in adherens junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of filamentous actin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in stress fiber IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PDZ and LIM domain protein 7
    Names
    PDZ and LIM domain 7 (enigma)
    enigma protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017947.1 → NP_001017947.1  PDZ and LIM domain protein 7 isoform 1

      See identical proteins and their annotated locations for NP_001017947.1

      Status: PROVISIONAL

      Source sequence(s)
      BT020909
      UniProtKB/TrEMBL
      A0AAF6YQZ7
      Conserved Domains (2) summary
      cd00992
      Location:5 → 79
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam15936
      Location:129 → 188
      DUF4749; Domain of unknown function (DUF4749)

    2. NM_001113251.1 → NP_001106722.1  PDZ and LIM domain protein 7 isoform 2

      See identical proteins and their annotated locations for NP_001106722.1

      Status: PROVISIONAL

      Source sequence(s)
      BC104521
      UniProtKB/Swiss-Prot
      Q3SX40, Q5E9L1
      UniProtKB/TrEMBL
      A0A452DI64
      Related
      ENSBTAP00000057436.2, ENSBTAT00000084797.2
      Conserved Domains (5) summary
      cd09452
      Location:249 → 300
      LIM1_Enigma; The first LIM domain of Enigma
      cd09458
      Location:367 → 421
      LIM3_Enigma; The third LIM domain of Enigma
      cd00992
      Location:5 → 79
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cl02475
      Location:308 → 359
      LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
      cl26464
      Location:84 → 220
      Atrophin-1; Atrophin-1 family

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037334.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      38975500..38995593 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005209202.5 → XP_005209259.1  PDZ and LIM domain protein 7 isoform X1

      See identical proteins and their annotated locations for XP_005209259.1

      UniProtKB/TrEMBL
      A0A452DI64, A1L5A7
      Related
      ENSBTAP00000024902.4, ENSBTAT00000024902.6
      Conserved Domains (5) summary
      cd09452
      Location:283 → 334
      LIM1_Enigma; The first LIM domain of Enigma
      cd09456
      Location:342 → 393
      LIM2_Enigma; The second LIM domain of Enigma
      cd09458
      Location:401 → 455
      LIM3_Enigma; The third LIM domain of Enigma
      cd00992
      Location:5 → 79
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cl26464
      Location:80 → 254
      Atrophin-1; Atrophin-1 family

    2. XM_005209203.5 → XP_005209260.1  PDZ and LIM domain protein 7 isoform X1

      See identical proteins and their annotated locations for XP_005209260.1

      UniProtKB/TrEMBL
      A0A452DI64, A1L5A7
      Conserved Domains (5) summary
      cd09452
      Location:283 → 334
      LIM1_Enigma; The first LIM domain of Enigma
      cd09456
      Location:342 → 393
      LIM2_Enigma; The second LIM domain of Enigma
      cd09458
      Location:401 → 455
      LIM3_Enigma; The third LIM domain of Enigma
      cd00992
      Location:5 → 79
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cl26464
      Location:80 → 254
      Atrophin-1; Atrophin-1 family

    3. XM_005209205.5 → XP_005209262.1  PDZ and LIM domain protein 7 isoform X2

      See identical proteins and their annotated locations for XP_005209262.1

      UniProtKB/TrEMBL
      A0AAF6YQZ7
      Related
      ENSBTAP00000009662.3, ENSBTAT00000009662.4
      Conserved Domains (2) summary
      cd00992
      Location:5 → 79
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam15936
      Location:129 → 188
      DUF4749; Domain of unknown function (DUF4749)

    4. XM_010807159.4 → XP_010805461.1  PDZ and LIM domain protein 7 isoform X2

      See identical proteins and their annotated locations for XP_010805461.1

      UniProtKB/TrEMBL
      A0AAF6YQZ7
      Conserved Domains (2) summary
      cd00992
      Location:5 → 79
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam15936
      Location:129 → 188
      DUF4749; Domain of unknown function (DUF4749)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3SX40.1 GenPept UniProtKB/Swiss-Prot:Q3SX40

    Gene LinkOut

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